View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7735_low_6 (Length: 259)

Name: NF7735_low_6
Description: NF7735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7735_low_6
NF7735_low_6
[»] chr7 (5 HSPs)
chr7 (18-130)||(24720701-24720816)
chr7 (23-77)||(12309192-12309246)
chr7 (14-78)||(2719888-2719952)
chr7 (23-78)||(42586007-42586060)
chr7 (26-81)||(20142799-20142854)
[»] chr3 (6 HSPs)
chr3 (22-78)||(13700003-13700059)
chr3 (23-78)||(42070150-42070205)
chr3 (20-78)||(17765293-17765351)
chr3 (20-78)||(19066613-19066671)
chr3 (20-78)||(38872201-38872259)
chr3 (50-78)||(1101267-1101295)
[»] chr1 (2 HSPs)
chr1 (20-77)||(11563987-11564043)
chr1 (23-78)||(34904150-34904205)
[»] chr5 (1 HSPs)
chr5 (23-77)||(17765031-17765085)
[»] scaffold0636 (1 HSPs)
scaffold0636 (34-78)||(824-868)
[»] chr4 (1 HSPs)
chr4 (34-78)||(36297815-36297859)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 24720701 - 24720816
Alignment:
Q  18 aaaattggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaatcg---ataannnnnnnaatacaacattaacaatctatta 114  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |   ||||       ||||||||||||| |||||||||    
T  24720701 aaaattggtgtgacttcactatttagcaaacttttttatatataagagaaaaatatttaatagaaaataatttttttaatacaacattaagaatctatta 24720800  T
Q  115 aacataacactcgacc 130  Q
    ||||||||||||||||    
T  24720801 aacataacactcgacc 24720816  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 12309192 - 12309246
Alignment:
Q  23 tggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaa 77  Q
    |||||||||| ||||||||| |||| |||| ||||||||||||||||||||||||    
T  12309192 tggtgtgactcaactatttaacaaatttttgtatatataagagaaaaatatttaa 12309246  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 2719888 - 2719952
Alignment:
Q  14 atccaaaattggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaat 78  Q
    ||||| || |||| ||| ||||||||||| || | |||| |||||||||||||||||||||||||    
T  2719888 atccacaactggtttgatttaactatttaacagatttttgtatatataagagaaaaatatttaat 2719952  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 42586060 - 42586007
Alignment:
Q  23 tggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaat 78  Q
    |||||||||| ||||||||| ||||  ||||| |||||||||||||||||||||||    
T  42586060 tggtgtgactcaactatttaacaaa--tttttgtatataagagaaaaatatttaat 42586007  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 20142799 - 20142854
Alignment:
Q  26 tgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaatcga 81  Q
    ||||||| || | |||| |||| |||| ||||||||||||||||||||||||||||    
T  20142799 tgtgactcaaatgtttaacaaatttttgtatatataagagaaaaatatttaatcga 20142854  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 13700003 - 13700059
Alignment:
Q  22 ttggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaat 78  Q
    ||||||||||| ||||||||| |||| |||| |||||||||||||||||||| ||||    
T  13700003 ttggtgtgactcaactatttaacaaaattttgtatatataagagaaaaatatctaat 13700059  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 42070205 - 42070150
Alignment:
Q  23 tggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaat 78  Q
    |||||||||| ||||||||| || | ||||||||  ||||||||||||||||||||    
T  42070205 tggtgtgactcaactatttaacacatttttttatgcataagagaaaaatatttaat 42070150  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 17765351 - 17765293
Alignment:
Q  20 aattggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaat 78  Q
    ||||||||| ||| ||||||||| |||| | ||  ||||||||||||||||||||||||    
T  17765351 aattggtgtcactcaactatttaacaaattattgaatatataagagaaaaatatttaat 17765293  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 19066671 - 19066613
Alignment:
Q  20 aattggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaat 78  Q
    ||||||||| ||| ||||||||| |||| | ||  ||||||||||||||||||||||||    
T  19066671 aattggtgtcactcaactatttaacaaattattgaatatataagagaaaaatatttaat 19066613  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 38872201 - 38872259
Alignment:
Q  20 aattggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaat 78  Q
    ||||| ||||| ||||||||||| |||  ||||| |||||||||| |||||||||||||    
T  38872201 aattgatgtgatttaactatttaacaagatttttgatatataagataaaaatatttaat 38872259  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 1101295 - 1101267
Alignment:
Q  50 tttttatatataagagaaaaatatttaat 78  Q
    |||||||||||||||||||||||||||||    
T  1101295 tttttatatataagagaaaaatatttaat 1101267  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 11564043 - 11563987
Alignment:
Q  20 aattggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaa 77  Q
    ||||||||||||| ||||||||| |||| |||| ||||||||||| ||||||||||||    
T  11564043 aattggtgtgactcaactatttaacaaatttttgtatatataaga-aaaaatatttaa 11563987  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 34904150 - 34904205
Alignment:
Q  23 tggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaat 78  Q
    |||||||||| ||||||||| |||| |||| ||| || ||||||||||||||||||    
T  34904150 tggtgtgactcaactatttaacaaatttttgtatgtacaagagaaaaatatttaat 34904205  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 17765031 - 17765085
Alignment:
Q  23 tggtgtgacttaactatttatcaaacttttttatatataagagaaaaatatttaa 77  Q
    |||||||||| ||||||||| |||| | || ||||||||| ||||||||||||||    
T  17765031 tggtgtgactcaactatttaacaaattattgtatatataaaagaaaaatatttaa 17765085  T

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Target: scaffold0636 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 868 - 824
Alignment:
Q  34 aactatttatcaaacttttttatatataagagaaaaatatttaat 78  Q
    ||||||||| |||| |||| |||||| ||||||||||||||||||    
T  868 aactatttaacaaatttttgtatatacaagagaaaaatatttaat 824  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 36297815 - 36297859
Alignment:
Q  34 aactatttatcaaacttttttatatataagagaaaaatatttaat 78  Q
    |||| |||| |||| |||| |||||||||||||||||||||||||    
T  36297815 aactgtttaacaaatttttgtatatataagagaaaaatatttaat 36297859  T

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