View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7736_low_1 (Length: 331)

Name: NF7736_low_1
Description: NF7736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7736_low_1
NF7736_low_1
[»] chr4 (6 HSPs)
chr4 (89-315)||(53488665-53488891)
chr4 (13-91)||(53488916-53488994)
chr4 (208-309)||(53495369-53495470)
chr4 (234-308)||(53493009-53493083)
chr4 (234-308)||(53499301-53499375)
chr4 (222-309)||(53502411-53502498)
[»] chr3 (2 HSPs)
chr3 (222-308)||(38214059-38214145)
chr3 (222-308)||(38218278-38218364)
[»] chr7 (3 HSPs)
chr7 (177-308)||(37188878-37189009)
chr7 (256-308)||(32709833-32709885)
chr7 (256-308)||(32715055-32715107)
[»] chr8 (3 HSPs)
chr8 (210-308)||(35018036-35018134)
chr8 (222-308)||(42991360-42991446)
chr8 (248-310)||(33811087-33811149)
[»] chr2 (3 HSPs)
chr2 (244-309)||(16942678-16942743)
chr2 (244-309)||(17013343-17013408)
chr2 (256-309)||(37638856-37638909)
[»] chr1 (1 HSPs)
chr1 (248-310)||(47495928-47495990)
[»] chr6 (3 HSPs)
chr6 (256-308)||(10379776-10379828)
chr6 (256-308)||(10411402-10411454)
chr6 (250-309)||(33450450-33450509)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 89 - 315
Target Start/End: Complemental strand, 53488891 - 53488665
Alignment:
Q  89 tggtattttaaattctctaaatttacatgatctcataatcctcttgatcaacttgtctttgcttttcagattttctattgacggcagaccaattagggaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53488891 tggtattttaaattctctaaatttacatgatctcataatcctcttgatcaacttgtccttgcttttcagattttctattgacggcagaccaattagggaa 53488792  T
Q  189 ttcaaaaacttggagagtgaaggtgttccatatccaaagaagcagccaatgagattatattcaagtctatggaatgctgatgattgggcaacaagaggtg 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53488791 ttcaaaaacttggagagtgaaggtgttccatatccaaagaagcagccaatgagattatattcaagtctatggaatgccgatgattgggcaacaagaggtg 53488692  T
Q  289 gtcttgtgaaaacagattggaatcaag 315  Q
    |||||||||||||||||||||||||||    
T  53488691 gtcttgtgaaaacagattggaatcaag 53488665  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 53488994 - 53488916
Alignment:
Q  13 cagagataaatatacaaaatttgaaacacataggaactatttgtgtacacaatatgaacaaattatatggaccaattgg 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53488994 cagagataaatatacaaaatttgaaacacataggaactatttgtgtacacaatatgaacaaattatatggaccaattgg 53488916  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 53495369 - 53495470
Alignment:
Q  208 aaggtgttccatatccaaagaagcagccaatgagattatattcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattg 307  Q
    |||| ||| ||| ||||||||| || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  53495369 aaggagttgcatttccaaagaatcaaccaatgaggatatattcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtcaagacagattg 53495468  T
Q  308 ga 309  Q
    ||    
T  53495469 ga 53495470  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 53493009 - 53493083
Alignment:
Q  234 ccaatgagattatattcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 308  Q
    ||||||||  |||| |||||||| ||||||||||||||||||||||||||||| || ||||| || |||||||||    
T  53493009 ccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaagacagattgg 53493083  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 53499301 - 53499375
Alignment:
Q  234 ccaatgagattatattcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 308  Q
    ||||||||  |||| |||||||| ||||||||||||||||||||||||||||| || ||||| || |||||||||    
T  53499301 ccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaagacagattgg 53499375  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 309
Target Start/End: Original strand, 53502411 - 53502498
Alignment:
Q  222 ccaaagaagcagccaatgagattatattcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgga 309  Q
    |||||||| || ||||||||| ||||||||||| | |||||||| ||| | ||||||||||||||||| || || || ||||||||||    
T  53502411 ccaaagaaccaaccaatgagaatatattcaagtttgtggaatgcagataactgggcaacaagaggtggactagtcaagacagattgga 53502498  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 38214145 - 38214059
Alignment:
Q  222 ccaaagaagcagccaatgagattatattcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 308  Q
    |||||||| || ||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||| | |||||||| ||||||    
T  38214145 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 38214059  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 38218364 - 38218278
Alignment:
Q  222 ccaaagaagcagccaatgagattatattcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 308  Q
    |||||||| || ||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||| | |||||||| ||||||    
T  38218364 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 38218278  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 37188878 - 37189009
Alignment:
Q  177 ccaattagggaattcaaaaacttggagagtgaaggtgttccatatccaaagaagcagccaatgagattatattcaagtctatggaatgctgatgattggg 276  Q
    ||||||||||||||||||||| ||||     | ||||||||||  || || |  || ||||||||| | ||||| ||||| |||||||||||||||||||    
T  37188878 ccaattagggaattcaaaaacatggaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattggg 37188977  T
Q  277 caacaagaggtggtcttgtgaaaacagattgg 308  Q
    | ||||||||||| ||||| || |||||||||    
T  37188978 ctacaagaggtggacttgttaagacagattgg 37189009  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 32709833 - 32709885
Alignment:
Q  256 tatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 308  Q
    |||||||||| |||||||||||||||||||||||  | | |||||||||||||    
T  32709833 tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattgg 32709885  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 32715055 - 32715107
Alignment:
Q  256 tatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 308  Q
    |||||||||| ||||||||||| |||||||||||| | | |||||||||||||    
T  32715055 tatggaatgcagatgattgggccacaagaggtggtttggagaaaacagattgg 32715107  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 35018036 - 35018134
Alignment:
Q  210 ggtgttccatatccaaagaagcagccaatgagattatattcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 308  Q
    |||||||| | ||||||||| || ||||||||| | ||||| || || |||||||||||||||||||| |||||||||||  | |||||||| ||||||    
T  35018036 ggtgttccttttccaaagaaccaaccaatgagaatctattccagcctgtggaatgctgatgattgggccacaagaggtggattggtgaaaactgattgg 35018134  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 308
Target Start/End: Original strand, 42991360 - 42991446
Alignment:
Q  222 ccaaagaagcagccaatgagattatattcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 308  Q
    |||||||| || || |||||| ||||||||||||| ||||| ||||| |||||||| |||||||||||| | |||||||| ||||||    
T  42991360 ccaaagaaccaaccgatgagaatatattcaagtctttggaacgctgaagattgggctacaagaggtggtttggtgaaaactgattgg 42991446  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 33811149 - 33811087
Alignment:
Q  248 ttcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattggaa 310  Q
    ||||||| |||||||||| ||||||||||| ||||||||||| ||||  |||||| |||||||    
T  33811149 ttcaagtgtatggaatgcagatgattgggctacaagaggtggacttgaaaaaacaaattggaa 33811087  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 16942678 - 16942743
Alignment:
Q  244 tatattcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgga 309  Q
    ||||||||||||| |||||||| ||| ||||||| || ||||||||  ||||||||||||||||||    
T  16942678 tatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattgga 16942743  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 17013343 - 17013408
Alignment:
Q  244 tatattcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgga 309  Q
    ||||||||||||| |||||||| ||| ||||||| || ||||||||  ||||||||||||||||||    
T  17013343 tatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattgga 17013408  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 37638856 - 37638909
Alignment:
Q  256 tatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgga 309  Q
    |||||||||| |||||||||||||||  |||||||| |||||||||||||||||    
T  37638856 tatggaatgcagatgattgggcaacacaaggtggtcgtgtgaaaacagattgga 37638909  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 47495928 - 47495990
Alignment:
Q  248 ttcaagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattggaa 310  Q
    ||||||| |||||||||| ||||||||||| ||||||||||| ||||  |||||| |||||||    
T  47495928 ttcaagtgtatggaatgcagatgattgggctacaagaggtggacttgaaaaaacaaattggaa 47495990  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 10379828 - 10379776
Alignment:
Q  256 tatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 308  Q
    |||||||||||||||||||||| ||||| |||||| | | |||||||||||||    
T  10379828 tatggaatgctgatgattgggccacaaggggtggtttagagaaaacagattgg 10379776  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 10411402 - 10411454
Alignment:
Q  256 tatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 308  Q
    |||||||||||||||||||||| ||||| |||||| | | |||||||||||||    
T  10411402 tatggaatgctgatgattgggctacaaggggtggtttggagaaaacagattgg 10411454  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 33450450 - 33450509
Alignment:
Q  250 caagtctatggaatgctgatgattgggcaacaagaggtggtcttgtgaaaacagattgga 309  Q
    ||||| |||||||||| ||| ||||||| ||||||||||| ||||| |||||| ||||||    
T  33450450 caagtttatggaatgcagataattgggccacaagaggtggacttgttaaaacaaattgga 33450509  T

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