View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7736_low_2 (Length: 425)
Name: NF7736_low_2
Description: NF7736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7736_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 6769295 - 6769698
Alignment:
| Q |
1 |
taggatccaaggcctaaaagaatgggtactgctgatcatagatattaggtgcaaagtatctgattagaattaggatgctatcttcttatttgcaaaaagg |
100 |
Q |
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| T |
6769295 |
taggatccaaggcctaaaagaatgggtgctgctgatcattga-attaggtgcaaagtatctgattagaattaggatgctatcttcttatttgcaaaaagg |
6769393 |
T |
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| Q |
101 |
actctggaggttaatcctactgctggattaaaacaatggtcagattttgtatgtcattatgctctcttgacatagatcaacactccaggcaaatttttgg |
200 |
Q |
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| T |
6769394 |
actctggaggttaatcctactgctggattaaaacaatggtcagattttgtatttgattatgctctcttgacatagatcaacactccaggcaaatttttgg |
6769493 |
T |
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| Q |
201 |
atgagctgttagttacgaattttttggtggcactgtgatgttattcaagctctgttcatctttgttatcacgttaaatttgtcaattgtcaaaatcatgg |
300 |
Q |
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| T |
6769494 |
atgagctgttagttacgaattttttggtggcactgtgatgttattcaagctctgttcatctttgttatcactttaaatttgtcaattgtcaaaatcatgg |
6769593 |
T |
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| Q |
301 |
tggtttgcagtaattttggtgaactcaccattataccgaacatatactctaaagtgcagcttttatccaaagataaaattggaaaaacgcaggacgcatg |
400 |
Q |
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| T |
6769594 |
tggtttgcagtaattttggtgaactcactattataccgaacatatactctaaagtgcagcttttatccaaagataaaattggaaaaacgcaggacgcatg |
6769693 |
T |
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| Q |
401 |
agaat |
405 |
Q |
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| T |
6769694 |
agaat |
6769698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 128 - 367
Target Start/End: Original strand, 6773582 - 6773817
Alignment:
| Q |
128 |
ttaaaacaatggtcagattttgtatgtcattat--gctctcttgacatagatcaacactccaggcaaatt-tttggatgagctgttagttacgaattttt |
224 |
Q |
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| T |
6773582 |
ttaaaacaatggctagattttgtatgtgattatatgctctcttgaaaccgatcaacacccctggctaattgtttggatgagctgttaggaaaaa---ttt |
6773678 |
T |
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| Q |
225 |
tggtggcactgtgatgttattcaagctctgttcatctttgttatcacgttaaatttgtcaattgtcaaaatcatggtggtttgcagtaattttggtgaac |
324 |
Q |
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| T |
6773679 |
cggtggcactgtcatgttattcaagttctgttcatctttgatttcgcgttaaattt----attgtcaaaatcatggcggttcaccgtaattttggtgaaa |
6773774 |
T |
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| Q |
325 |
tcaccattataccgaacatatactctaaagtgcagcttttatc |
367 |
Q |
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| T |
6773775 |
tcaccttggtaccaaacatacactctaaaatgtagcttttatc |
6773817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 6773407 - 6773477
Alignment:
| Q |
6 |
tccaaggcctaaaagaatgggtactgctgatcatagatattaggtgcaaagtatctgattagaattaggatg |
77 |
Q |
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| T |
6773407 |
tccaatgcctaaaagaatgaatgctcctgatcataga-attaggtgtaaagcatctgattagaattaggatg |
6773477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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