View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_high_15 (Length: 445)

Name: NF7737_high_15
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_high_15
NF7737_high_15
[»] chr5 (4 HSPs)
chr5 (15-428)||(9012155-9012566)
chr5 (19-208)||(33013587-33013778)
chr5 (87-156)||(27593410-27593479)
chr5 (94-156)||(30326774-30326836)
[»] chr7 (5 HSPs)
chr7 (23-232)||(4119663-4119873)
chr7 (122-159)||(15464148-15464185)
chr7 (201-230)||(26374258-26374287)
chr7 (94-158)||(4110096-4110160)
chr7 (78-158)||(20181585-20181665)
[»] chr8 (11 HSPs)
chr8 (15-157)||(10901177-10901318)
chr8 (19-208)||(21588519-21588710)
chr8 (105-230)||(16221263-16221389)
chr8 (19-158)||(30254898-30255037)
chr8 (78-228)||(12158442-12158594)
chr8 (84-176)||(32917856-32917949)
chr8 (74-153)||(45527686-45527767)
chr8 (105-156)||(361308-361359)
chr8 (19-81)||(45527503-45527565)
chr8 (87-156)||(45245555-45245624)
chr8 (78-154)||(14375246-14375322)
[»] chr4 (6 HSPs)
chr4 (19-230)||(282131-282342)
chr4 (82-208)||(39975119-39975246)
chr4 (120-230)||(50158425-50158536)
chr4 (101-186)||(6555603-6555689)
chr4 (196-236)||(3774021-3774061)
chr4 (110-158)||(22678743-22678791)
[»] chr1 (4 HSPs)
chr1 (110-230)||(31420928-31421048)
chr1 (105-217)||(49878641-49878753)
chr1 (105-156)||(21467464-21467515)
chr1 (15-157)||(31090044-31090187)
[»] chr6 (5 HSPs)
chr6 (78-158)||(16707606-16707687)
chr6 (111-158)||(29214007-29214054)
chr6 (93-157)||(3531769-3531833)
chr6 (104-228)||(10189930-10190055)
chr6 (124-156)||(21986549-21986581)
[»] chr3 (8 HSPs)
chr3 (110-230)||(52752579-52752700)
chr3 (101-224)||(52754666-52754790)
chr3 (105-156)||(2251235-2251286)
chr3 (19-208)||(36096321-36096512)
chr3 (94-156)||(14233081-14233142)
chr3 (125-230)||(14240959-14241064)
chr3 (87-156)||(39184402-39184471)
chr3 (110-158)||(52075-52123)
[»] scaffold0380 (1 HSPs)
scaffold0380 (110-225)||(14809-14925)
[»] chr2 (5 HSPs)
chr2 (110-224)||(6911584-6911699)
chr2 (117-158)||(45659448-45659489)
chr2 (112-158)||(19994237-19994283)
chr2 (125-230)||(45054455-45054561)
chr2 (18-58)||(36726748-36726788)
[»] scaffold0036 (1 HSPs)
scaffold0036 (83-188)||(49919-50024)
[»] scaffold0024 (1 HSPs)
scaffold0024 (13-59)||(46992-47038)
[»] scaffold0051 (1 HSPs)
scaffold0051 (110-159)||(17628-17677)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 428
Target Start/End: Complemental strand, 9012566 - 9012155
Alignment:
Q  15 tatgatgatttgttttgttaattattaggtgtcatttgattaattgttatcttaagttccaaattttagatgtcattctttttcatgcaattttgttatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |    
T  9012566 tatgatgatttgttttgttaattattaggtgtcatttgattaattgttatcttaaattccaaattttggatgtcattctttttcatgcaatttttttagt 9012467  T
Q  115 ctacctctattatttcaaattcctccacttttggtctttggt-ggatatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaatacatattt 213  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||    
T  9012466 ctacctctattatttcaaattcctccacttttgatctttggtgggatatgataatgacaaaatgtaggtgtgttctattcaattgacaaaatacatgttt 9012367  T
Q  214 attatacattttaaattaacatgccnnnnnnnaatgagtttatggttttgataacataattatctaataatctccgactctttcaacaaattcataaaat 313  Q
    |||| ||||||||||||| ||||||       |||||||||||||||||| || |||||||| ||| |||||||| |||||||||||||||||||||||     
T  9012366 attagacattttaaattaccatgcctttttttaatgagtttatggttttggtagcataattacctagtaatctccaactctttcaacaaattcataaaa- 9012268  T
Q  314 ttaccaaaacctcagtcaatttatctcaatttgttaattaagttattcacttccatttgatttaattaatatagccatctgacatatatatcactatagt 413  Q
    ||||||||||||||  | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9012267 ttaccaaaacctca--ctatttatctcaatttgttaattaagttattcgcttccatttgatttaattaatatagccatctgacatatatatcactatagc 9012170  T
Q  414 gtttgtagcgtttac 428  Q
    |||| ||| ||||||    
T  9012169 gtttttagtgtttac 9012155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 33013778 - 33013587
Alignment:
Q  19 atgatttgttttgttaattattaggtgtcatttgattaattgt-tatcttaagttccaaattttagatgtcattctttttcatgcaattttgttattcta 117  Q
    |||||||||||||||| || || ||||||||||| | |||| | ||| |||| ||  |  |||  ||||||||||  || ||||||||||| |||||| |    
T  33013778 atgatttgttttgttagttttttggtgtcatttgttaaattttgtattttaaattttagttttgggatgtcattcgcttccatgcaatttttttattcaa 33013679  T
Q  118 cctctattatttcaaattcctccacttttggtctttggt-ggatatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaataca 208  Q
    |||||||||||| ||||| || || |||| |||||||||  ||| ||| ||||  |||||||||  |||||| | | |||||||||||||||    
T  33013678 cctctattattttaaatttcttcaattttagtctttggtctgatttgacaatggtaaaatgtagacgtgttctactaagttgacaaaataca 33013587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 27593479 - 27593410
Alignment:
Q  87 tcattctttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttggt 156  Q
    |||||| ||||||||| ||||| |||||| |||||  |||||||||||||||  ||||||||||||||||    
T  27593479 tcattcgttttcatgctatttttttattcaacctcccttatttcaaattcctttacttttggtctttggt 27593410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 30326836 - 30326774
Alignment:
Q  94 ttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttggt 156  Q
    ||||||||| ||||| |||||| |||||  ||||||||||||||| || |||| |||||||||    
T  30326836 ttttcatgctatttttttattcaacctcacttatttcaaattccttcattttttgtctttggt 30326774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 4119873 - 4119663
Alignment:
Q  23 tttgttttgttaattattaggtgtcatttgattaattgttatcttaagttccaaattttagatgtcattctttttcatgcaattttgttattctacctct 122  Q
    |||||||||||| || ||||||| |||||| |||||| ||||||||| ||  ||||||| |||||||| ||||||||| ||||||| | ||||||| |||    
T  4119873 tttgttttgttagtttttaggtgccatttgtttaatttttatcttaaattataaattttggatgtcatgctttttcatacaattttttaattctacttct 4119774  T
Q  123 attatttcaaattcctccacttttggtctttggt-ggatatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaatacatatttattataca 221  Q
    |||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||    
T  4119773 attatttcaaattctttcacttttggtctttgatgggatatgataatgacaaaatgtaggtgtgttctactcagttgacaaaatacatgtttattagaca 4119674  T
Q  222 ttttaaattaa 232  Q
    |||| ||||||    
T  4119673 ttttcaattaa 4119663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 15464185 - 15464148
Alignment:
Q  122 tattatttcaaattcctccacttttggtctttggtgga 159  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  15464185 tattattttaaattccttcacttttggtctttggtgga 15464148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 26374287 - 26374258
Alignment:
Q  201 aaaatacatatttattatacattttaaatt 230  Q
    ||||||||||||||||||||||||||||||    
T  26374287 aaaatacatatttattatacattttaaatt 26374258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 4110160 - 4110096
Alignment:
Q  94 ttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttggtgg 158  Q
    ||||||||||||||| |||| | ||||||||||||  |||| ||| |||||||  ||||||||||    
T  4110160 ttttcatgcaatttttttatccaacctctattattctaaataccttcacttttaatctttggtgg 4110096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 20181585 - 20181665
Alignment:
Q  78 ttttagatgtcattctttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttggtgg 158  Q
    |||| ||| ||||||| ||| |||  ||||| | |||| || ||||||||||||||||| | |||||| ||||||||||||    
T  20181585 ttttggatttcattctcttttatgtgattttttcattcaacttctattatttcaaattcattcactttcggtctttggtgg 20181665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 10901318 - 10901177
Alignment:
Q  15 tatgatgatttgttttgttaattattaggtgtcatttgattaattgttatcttaagttccaaattttagatgtcattctttttcatgcaattttgttatt 114  Q
    |||||||||||||||||||| || || ||||||||||| |||||| ||||||||| ||  |  |||  ||||||||||  ||||| |||||||| |||||    
T  10901318 tatgatgatttgttttgttagttttttggtgtcatttgtttaatttttatcttaaattttagttttgggatgtcattcactttcaagcaatttt-ttatt 10901220  T
Q  115 ctacctctattatttcaaattcctccacttttggtctttggtg 157  Q
    | ||| ||||| | | |||||||| ||||| ||||||||||||    
T  10901219 caaccactattgtattaaattccttcacttctggtctttggtg 10901177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 21588710 - 21588519
Alignment:
Q  19 atgatttgttttgttaattatta-ggtgtcatttgattaattgt-tatcttaagttccaaattttagatgtcattctttttcatgcaattttgttattct 116  Q
    |||||||||||||||||| |||| ||||||||||| | |||| | |||||||| ||  |  ||| |||||||||||  || ||||||||||| ||||||     
T  21588710 atgatttgttttgttaat-attatggtgtcatttgttaaattttgtatcttaaattttagttttgagatgtcattcgcttccatgcaatttttttattca 21588612  T
Q  117 acctctattatttcaaattcctccacttttggtctttggt-ggatatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaataca 208  Q
    ||||||||||||| ||||| ||  | |||| |||||||||  ||| ||| ||||  |||||||||  |||||| | | |||||||||||||||    
T  21588611 acctctattattttaaatttctttagttttagtctttggtctgatttgacaatggaaaaatgtagacgtgttctactaagttgacaaaataca 21588519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 16221389 - 16221263
Alignment:
Q  105 ttttgttattctacctctattatttcaaattcctccacttttggtctttggtg-gatatgataatgacaaaatgtaggtgtgttcgattcagttgacaaa 203  Q
    |||| |||||| |||||| ||||||| ||||||| |||||| ||| ||||||| ||||| | ||||  ||||| ||| ||||||    | |||| |||||    
T  16221389 tttttttattcaacctctgttatttctaattccttcactttaggtttttggtgagatataacaatggaaaaatatagatgtgttatgctgagtttacaaa 16221290  T
Q  204 atacatatttattatacattttaaatt 230  Q
    |||||| ||||||| ||||||||||||    
T  16221289 atacatgtttattagacattttaaatt 16221263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 30254898 - 30255037
Alignment:
Q  19 atgatttgttttgttaattatt-aggtgtcatttgattaattgtt-atcttaagttccaaattttagatgtcattctttttcatgcaattttgttattct 116  Q
    ||||||| |||||||| || || | |||||||||| |||||| || ||||||  |||||| ||||  |||| ||||  ||||| |||| ||| ||||||     
T  30254898 atgatttattttgttagttttttatgtgtcatttgtttaattttttatcttagattccaatttttgaatgttattcgctttcaagcaaattttttattca 30254997  T
Q  117 acctctattatttcaaattcctccacttttggtctttggtgg 158  Q
    ||||||  |||||||||||||| |||||||||| ||||||||    
T  30254998 acctct--tatttcaaattccttcacttttggtatttggtgg 30255037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 12158442 - 12158594
Alignment:
Q  78 ttttagatgtcattctttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttggtgg-atatgataatg-acaaaa 175  Q
    |||| |||||| |||| ||| |||| ||||| |||||| || |||||||||| |||||||| || |||||||||||| ||| || ||| |||| | ||||    
T  12158442 tttttgatgtctttctctttaatgctatttt-ttattcaacttctattattttaaattccttcaattttggtctttgatggcatgtgacaatgaaaaaaa 12158540  T
Q  176 tgtaggtgtgttcgattcagttgac-aaaatacatatttattatacattttaaa 228  Q
    |||  |||||||  | | ||||||| |||||||||||||| || ||||||||||    
T  12158541 tgttcgtgtgttatactaagttgacaaaaatacatatttagtaaacattttaaa 12158594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 32917856 - 32917949
Alignment:
Q  84 atgtcattctttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttggt-ggatatgataatgacaaaat 176  Q
    ||||||||| |||| || | ||||| |||||| |||| ||||||||||||||||| || ||||  |||||||| ||||  ||||||||||||||    
T  32917856 atgtcattcgttttgatactatttttttattcaacctttattatttcaaattccttcatttttattctttggtgggattagataatgacaaaat 32917949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 45527686 - 45527767
Alignment:
Q  74 caaattttagatgtcattcttttt-catgcaattttgttattctacctc-tattatttcaaattcctccacttttggtcttt 153  Q
    |||||||| ||||||||| ||||| ||||||||||| |||||  | | | |||||||| |||||||||||||||||||||||    
T  45527686 caaattttggatgtcatttttttttcatgcaatttttttattaaatcgcctattattttaaattcctccacttttggtcttt 45527767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 361308 - 361359
Alignment:
Q  105 ttttgttattctacctctattatttcaaattcctccacttttggtctttggt 156  Q
    |||| |||||| |||||  ||||||||||||||| |||||||||||||||||    
T  361308 tttttttattcaacctcacttatttcaaattccttcacttttggtctttggt 361359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 45527503 - 45527565
Alignment:
Q  19 atgatttgttttgttaattattaggtgtcatttgattaattgttatcttaagttccaaatttt 81  Q
    |||||||||||||||| || || ||||||||||| ||| || |||||| ||||| ||||||||    
T  45527503 atgatttgttttgttagtttttcggtgtcatttgtttagtttttatctgaagtttcaaatttt 45527565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 45245555 - 45245624
Alignment:
Q  87 tcattctttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttggt 156  Q
    |||||| ||||||||| ||| | |||||| |||||  |||||| ||||||||  ||||||||||||||||    
T  45245555 tcattcgttttcatgctattattttattcaacctcccttattttaaattcctttacttttggtctttggt 45245624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 14375246 - 14375322
Alignment:
Q  78 ttttagatgtcattctttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttg 154  Q
    ||||||||||| ||   |||||||||||||| |||||| |||||||||| |  |||||||| | |||||||| ||||    
T  14375246 ttttagatgtcgtttgctttcatgcaatttttttattcaacctctattactataaattccttcgcttttggtgtttg 14375322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 282131 - 282342
Alignment:
Q  19 atgatttgttttgttaattattaggtgtcatttgattaattgt-tatcttaagttccaaattttagatgtcattctttttcatgcaattttgttattcta 117  Q
    |||||||||||||||| || || ||||||||||| | |||||| |||||||| ||  |  |||  |||||||||| ||| ||||||||||| |||||| |    
T  282131 atgatttgttttgttagttgtttggtgtcatttgttaaattgtgtatcttaaattttagttttgggatgtcattcgtttccatgcaatttttttattcaa 282230  T
Q  118 cctctattatttcaaattcctccacttttggtctttggt-ggatatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaatacatatttatt 216  Q
     ||||||||||| ||||| || || |||| ||||||| |   || ||| ||||  |||||||||  |||||| | | ||||||||||||||  |||||||    
T  282231 tctctattattttaaatttcttcagttttagtctttgatccaatttgacaatgggaaaatgtagacgtgttctactaagttgacaaaatac--atttatt 282328  T
Q  217 atacattttaaatt 230  Q
    | | ||||||||||    
T  282329 agatattttaaatt 282342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 39975119 - 39975246
Alignment:
Q  82 agatgtcattctttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttggt-ggatatgataatgacaaaatgtag 180  Q
    |||||||||||  || ||||||||||| |||||| ||||||||||||| ||||| ||  | |||| |||||||||  ||| ||| ||||  |||||||||    
T  39975119 agatgtcattcgcttccatgcaatttttttattcaacctctattattttaaatttctttagttttagtctttggtctgatttgacaatgggaaaatgtag 39975218  T
Q  181 gtgtgttcgattcagttgacaaaataca 208  Q
      |||||| | | |||||||||||||||    
T  39975219 acgtgttctactaagttgacaaaataca 39975246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 50158425 - 50158536
Alignment:
Q  120 tctattatttcaaattcctccacttttggtctttggtgg-atatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaatacatatttattat 218  Q
    |||||||||||||||||||    |||||||||||| ||| ||  || ||||  ||||||||| | ||||  ||| |||||| ||||||||| |||||||     
T  50158425 tctattatttcaaattcctttgtttttggtctttgttgggatccgacaatggaaaaatgtagatatgttttatttagttgataaaatacatgtttattag 50158524  T
Q  219 acattttaaatt 230  Q
    ||||||||||||    
T  50158525 acattttaaatt 50158536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 6555603 - 6555689
Alignment:
Q  101 gcaattttgttattctacctctattatttcaaattcctccacttttggtctttggtg-gatatgataatgacaaaatgtaggtgtgt 186  Q
    |||||||| ||| || |||| |||||||| ||||| || |||||||||||||||||| ||| ||| ||||  ||||||||| |||||    
T  6555603 gcaatttttttagtcaacctttattattttaaattacttcacttttggtctttggtgtgatctgaaaatggaaaaatgtagatgtgt 6555689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 3774021 - 3774061
Alignment:
Q  196 ttgacaaaatacatatttattatacattttaaattaacatg 236  Q
    |||||||||||||||||||||| ||||||||| | ||||||    
T  3774021 ttgacaaaatacatatttattaaacattttaagtgaacatg 3774061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 22678791 - 22678743
Alignment:
Q  110 ttattctacctctattatttcaaattcctccacttttggtctttggtgg 158  Q
    |||||| ||||||||||||| ||||||||  | ||||||||||||||||    
T  22678791 ttattcaacctctattattttaaattcctttaattttggtctttggtgg 22678743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 31420928 - 31421048
Alignment:
Q  110 ttattctacctctattatttcaaattcctccacttttggtctttggtggatatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaatacat 209  Q
    |||||| ||| ||||||||| |||||| | |||||||||| || | ||||| | | ||||  ||||||||| |||| || | | ||||||||||||||||    
T  31420928 ttattcaaccgctattattttaaattctttcacttttggtattcgatggatctaacaatgtaaaaatgtagatgtgctctagtaagttgacaaaatacat 31421027  T
Q  210 atttattatacattttaaatt 230  Q
     ||||||| ||||||||||||    
T  31421028 gtttattagacattttaaatt 31421048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 49878641 - 49878753
Alignment:
Q  105 ttttgttattctacctctattatttcaaattcctccacttttggtctttggtggatatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaa 204  Q
    |||| |||||| |||||| ||||||| ||||||| |||||| ||| ||||| |||||||| ||| | ||||| ||| ||||||    | |||| ||||||    
T  49878641 tttttttattcaacctctgttatttctaattccttcactttaggtttttgggggatatgacaattaaaaaatatagatgtgttatgctgagtttacaaaa 49878740  T
Q  205 tacatatttatta 217  Q
    ||||| |||||||    
T  49878741 tacatgtttatta 49878753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 21467515 - 21467464
Alignment:
Q  105 ttttgttattctacctctattatttcaaattcctccacttttggtctttggt 156  Q
    |||| |||||| |||||  ||||||||||||||| |||||||||||||||||    
T  21467515 tttttttattcaacctcacttatttcaaattccttcacttttggtctttggt 21467464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 31090187 - 31090044
Alignment:
Q  15 tatgatgatttgttttgttaattattaggtgtcatttgattaattgtt-atcttaagttccaaattttagatgtcattctttttcatgcaattttgttat 113  Q
    |||||||||||||||||||| ||    ||||||||||| |||||| || ||||||| ||  |  ||||  |||||||||  |||||||   |||| ||||    
T  31090187 tatgatgatttgttttgttagtttaggggtgtcatttgtttaattttttatcttaaattttagtttttttatgtcattcgctttcatgatgtttttttat 31090088  T
Q  114 tctacctctattatttcaaattcctccacttttggtctttggtg 157  Q
    || |||||| ||||||||||||| | |||||||| | |||||||    
T  31090087 tcaacctctgttatttcaaattcattcacttttgatatttggtg 31090044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 16707606 - 16707687
Alignment:
Q  78 ttttagatgtcattctttttcatgc-aattttgttattctacctctattatttcaaattcctccacttttggtctttggtgg 158  Q
    |||| ||||||||||| |||| ||  |||||| | |||| |||||||||||||||||||| | |||||||||||||||||||    
T  16707606 ttttggatgtcattctatttcttgtgaattttttcattcaacctctattatttcaaattctttcacttttggtctttggtgg 16707687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 29214054 - 29214007
Alignment:
Q  111 tattctacctctattatttcaaattcctccacttttggtctttggtgg 158  Q
    ||||| ||||| ||||||||||||| || |||||||||||||||||||    
T  29214054 tattcaacctcaattatttcaaatttcttcacttttggtctttggtgg 29214007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 3531833 - 3531769
Alignment:
Q  93 tttttcatgcaattttgtt-attctacctctattatttcaaattcctccacttttggtctttggtg 157  Q
    |||||||||||| ||| || |||| ||| |||||||||||||||||| |||||||||| |||||||    
T  3531833 tttttcatgcaaattttttcattcaacc-ctattatttcaaattccttcacttttggtatttggtg 3531769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 10189930 - 10190055
Alignment:
Q  104 attttgttattctacctctattatttcaaattcctccacttttggtctttggtgga-tatgataatgacaaaatgtaggtgtgttcgattcagttgacaa 202  Q
    ||||| |||||| || || ||||||||| ||| || ||| |||||| ||||||||| | ||| ||||  ||| ||| | ||||||||| | ||| |||||    
T  10189930 atttttttattcaacttccattatttcatatttcttcacgtttggtttttggtggagtctgacaatggaaaagtgtggatgtgttcgactgagtggacaa 10190029  T
Q  203 aatacatatttattatacattttaaa 228  Q
    ||||||| ||||||| | ||||||||    
T  10190030 aatacatgtttattagaaattttaaa 10190055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 21986549 - 21986581
Alignment:
Q  124 ttatttcaaattcctccacttttggtctttggt 156  Q
    ||||||||||||||| |||||||||||||||||    
T  21986549 ttatttcaaattccttcacttttggtctttggt 21986581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 52752579 - 52752700
Alignment:
Q  110 ttattctacctctattatttcaaattcctccacttttggtctttggtgg-atatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaataca 208  Q
    |||||| |||||| ||||||| ||||||| |||||| ||| |||||||| |||||| ||||  ||||| ||| ||||||    | |||| ||||||||||    
T  52752579 ttattcaacctctgttatttctaattccttcactttaggtttttggtgggatatgacaatggaaaaatatagatgtgttatgctgagtttacaaaataca 52752678  T
Q  209 tatttattatacattttaaatt 230  Q
    | ||||||| ||||||||||||    
T  52752679 tgtttattagacattttaaatt 52752700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 52754666 - 52754790
Alignment:
Q  101 gcaattttgttattctacctctattatttcaaattcctccacttttggtctttggtg-gatatgataatgacaaaatgtaggtgtgttcgattcagttga 199  Q
    |||||||| ||| || |||| |||||||| ||||| ||  ||||||||||||||||| ||| ||| ||||  ||||||||| ||||||    | |||||     
T  52754666 gcaatttttttagtcaacctttattattttaaattactttacttttggtctttggtgtgatctgaaaatggaaaaatgtagatgtgttatgctgagttgg 52754765  T
Q  200 caaaatacatatttattatacattt 224  Q
    |||||||||||||||||| ||||||    
T  52754766 caaaatacatatttattagacattt 52754790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 2251235 - 2251286
Alignment:
Q  105 ttttgttattctacctctattatttcaaattcctccacttttggtctttggt 156  Q
    |||| |||||| ||||| |||||||||||||||| |||||||||||||||||    
T  2251235 tttttttattcaacctcaattatttcaaattccttcacttttggtctttggt 2251286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 36096321 - 36096512
Alignment:
Q  19 atgatttgttttgttaattattaggtgtcatttgattaattgt-tatcttaagttccaaattttagatgtcattctttttcatgcaattttgttattcta 117  Q
    |||||||||||||||| || || ||||||||||  | |||| | |||||||| ||  |  ||| |||||||||||  || ||||||||||| |||||| |    
T  36096321 atgatttgttttgttagttttttggtgtcatttcttaaattttgtatcttaaattttagttttgagatgtcattcgcttccatgcaatttttttattcaa 36096420  T
Q  118 cctctattatttcaaattcctccacttttggtctttggt-ggatatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaataca 208  Q
    |||||||||||| |||||  |  | |||| |||||||||  ||| ||| ||||  |||||||||  |||||| | | |||||||||||||||    
T  36096421 cctctattattttaaatttatttagttttagtctttggtccgatttgacaatgggaaaatgtagacgtgttctactaagttgacaaaataca 36096512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 14233081 - 14233142
Alignment:
Q  94 ttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttggt 156  Q
    ||||||||| ||||| |||||| |||||  ||||||||||||||| |||||||||||||||||    
T  14233081 ttttcatgctatttt-ttattcaacctcgcttatttcaaattccttcacttttggtctttggt 14233142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 14241064 - 14240959
Alignment:
Q  125 tatttcaaattcctccacttttggtctttggtggatatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaatacatatttattatacattt 224  Q
    ||||| |||||||| ||| || ||||||||| |||| ||  || || |||||||||  |||||   || |||||||||||||||| ||||||| ||||||    
T  14241064 tattttaaattccttcacattaggtctttggaggatctgcaaaagaaaaaatgtagaagtgttatgttgagttgacaaaatacatgtttattagacattt 14240965  T
Q  225 taaatt 230  Q
    ||||||    
T  14240964 taaatt 14240959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 39184402 - 39184471
Alignment:
Q  87 tcattctttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttggt 156  Q
    |||||| ||||||||| ||||| |||||| |||||  ||||||||||||| |  ||||||||||||||||    
T  39184402 tcattcgttttcatgctatttttttattcaacctcccttatttcaaattcttttacttttggtctttggt 39184471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 52075 - 52123
Alignment:
Q  110 ttattctacctctattatttcaaattcctccacttttggtctttggtgg 158  Q
    |||||| ||||| ||||||| |||||||| || ||||||||||||||||    
T  52075 ttattcaacctccattattttaaattccttcaattttggtctttggtgg 52123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 14809 - 14925
Alignment:
Q  110 ttattctacctctattatttcaaattcctccacttttggtctttggt-ggatatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaataca 208  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||||  ||| ||| ||||| |||||| ||  |||||   ||  |||||||||||| |    
T  14809 ttattcaacctctattattttaaattccttcacttttggtctttggtctgatttgacaatgaaaaaatgcagacgtgttttgttacgttgacaaaatata 14908  T
Q  209 tatttattatacatttt 225  Q
    | ||||||| |||||||    
T  14909 tgtttattagacatttt 14925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 6911584 - 6911699
Alignment:
Q  110 ttattctacctctattatttcaaattcctccacttttggtctttggtgg-atatgataatgacaaaatgtaggtgtgttcgattcagttgacaaaataca 208  Q
    |||||| ||||||||||||| ||||| || || ||||| |||||||||| || ||| ||||| ||||||| | ||||||  | | |||||||| ||||||    
T  6911584 ttattcaacctctattattttaaatttcttcaattttgatctttggtggcatgtgacaatgaaaaaatgttgatgtgttatactaagttgacacaataca 6911683  T
Q  209 tatttattatacattt 224  Q
    |||||| || ||||||    
T  6911684 tatttagtaaacattt 6911699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 45659448 - 45659489
Alignment:
Q  117 acctctattatttcaaattcctccacttttggtctttggtgg 158  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  45659448 acctctattatttcaaataccttcacttttggtctttggtgg 45659489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 19994283 - 19994237
Alignment:
Q  112 attctacctctattatttcaaattcctccacttttggtctttggtgg 158  Q
    |||| ||||||||||||||||||||||||| ||||||| ||| ||||    
T  19994283 attcaacctctattatttcaaattcctccagttttggtattttgtgg 19994237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 45054561 - 45054455
Alignment:
Q  125 tatttcaaattcctccacttttggtctttggtggatatgataatgacaaaa-tgtaggtgtgttcgattcagttgacaaaatacatatttattatacatt 223  Q
    ||||| |||||||| |||||| | ||||||| |||||||  || || |||| ||||| ||||||   || |||||||||||||||| ||||||| | |||    
T  45054561 tattttaaattccttcactttagatctttggaggatatgcaaaagaaaaaaatgtagatgtgttatgttgagttgacaaaatacatgtttattagatatt 45054462  T
Q  224 ttaaatt 230  Q
    |||||||    
T  45054461 ttaaatt 45054455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 36726788 - 36726748
Alignment:
Q  18 gatgatttgttttgttaattattaggtgtcatttgattaat 58  Q
    ||||||||||||||||| || |||||||||||||| |||||    
T  36726788 gatgatttgttttgttagtttttaggtgtcatttgtttaat 36726748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 50024 - 49919
Alignment:
Q  83 gatgtcattctttttcatgcaattttgttattctacctctattatttcaaattcctccacttttggtctttggt-ggatatgataatgacaaaatgtagg 181  Q
    ||||||||||  ||||| |||||||| | |||| ||||| ||||||| |||||||| |||||||||||||| ||  ||| ||| ||||| |||||||||     
T  50024 gatgtcattcactttcaagcaatttt-tgattcaacctcaattattttaaattccttcacttttggtcttttgtccgatttgacaatgaaaaaatgtaga 49926  T
Q  182 tgtgttc 188  Q
    |||||||    
T  49925 tgtgttc 49919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 47038 - 46992
Alignment:
Q  13 aatatgatgatttgttttgttaattattaggtgtcatttgattaatt 59  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||    
T  47038 aatatgatgatttgttttgttaattttaaggtgtcatttgtttaatt 46992  T

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Target: scaffold0051 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 17628 - 17677
Alignment:
Q  110 ttattctacctctattatttcaaattcctccacttttggtctttggtgga 159  Q
    |||||| || |||||||||| ||||| || ||||||||||||||||||||    
T  17628 ttattcaacatctattattttaaattacttcacttttggtctttggtgga 17677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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