View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_high_16 (Length: 438)

Name: NF7737_high_16
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_high_16
NF7737_high_16
[»] chr3 (4 HSPs)
chr3 (177-417)||(19246039-19246276)
chr3 (177-417)||(17663384-17663621)
chr3 (18-104)||(17663850-17663936)
chr3 (18-104)||(19246351-19246437)
[»] chr2 (2 HSPs)
chr2 (19-104)||(33137629-33137714)
chr2 (285-341)||(33136695-33136751)
[»] chr1 (19 HSPs)
chr1 (27-97)||(45526202-45526272)
chr1 (20-94)||(35203174-35203248)
chr1 (25-97)||(35295189-35295261)
chr1 (20-94)||(35476988-35477062)
chr1 (27-92)||(8640315-8640380)
chr1 (20-97)||(35216965-35217042)
chr1 (28-99)||(35272922-35272993)
chr1 (27-97)||(35206425-35206495)
chr1 (27-97)||(35213583-35213653)
chr1 (18-104)||(35222780-35222866)
chr1 (193-243)||(35228634-35228684)
chr1 (20-93)||(35192834-35192907)
chr1 (21-94)||(45534400-45534473)
chr1 (28-96)||(35228446-35228514)
chr1 (20-97)||(35145221-35145298)
chr1 (177-243)||(35273052-35273118)
chr1 (28-89)||(35265360-35265421)
chr1 (17-97)||(35253926-35254006)
chr1 (177-277)||(35265523-35265623)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 177 - 417
Target Start/End: Complemental strand, 19246276 - 19246039
Alignment:
Q  177 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagaccttttttggtaaaagtgtttgccggtgaaggagattgtaagatg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  19246276 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagatcttttttggtaaaagtgtttgccagtgaaggagattgtaagatg 19246177  T
Q  277 atagagtcggaagtcagaaaacggtcccagacggtgtcggaatcggctgcagaacggaaagactttgaaaggatattagagagcctacaagcgtcaaccg 376  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||    
T  19246176 atagagtcggaagtaagaaaacggtcccagacggtgtcggaatcggctgcagaacggaaagactttgaaagga---tagagagcctacaagcatcaaccg 19246080  T
Q  377 gagtcgtacaagatagtatgatcgcgatgcacccttcaggc 417  Q
    ||||| |||||||||||||  ||||||||||||||||||||    
T  19246079 gagtcctacaagatagtatcgtcgcgatgcacccttcaggc 19246039  T

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Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 177 - 417
Target Start/End: Complemental strand, 17663621 - 17663384
Alignment:
Q  177 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagaccttttttggtaaaagtgtttgccggtgaaggagattgtaagatg 276  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||    
T  17663621 tacctttgtaccctggtcgatgatgatagggcgatcagatagagccatgtagagatcttttttggtaaaagtgtttgccagggaaggagattgtaagatg 17663522  T
Q  277 atagagtcggaagtcagaaaacggtcccagacggtgtcggaatcggctgcagaacggaaagactttgaaaggatattagagagcctacaagcgtcaaccg 376  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||||    
T  17663521 atagagtcggaaatcagaaaacggtcccagacggtgtcggaatcggctgcagaacggaaagactttgaaagga---tagagagcctgcaagcgtcaaccg 17663425  T
Q  377 gagtcgtacaagatagtatgatcgcgatgcacccttcaggc 417  Q
    |||| ||||||||||||||  ||||||||||||||||||||    
T  17663424 gagttgtacaagatagtatcgtcgcgatgcacccttcaggc 17663384  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 17663936 - 17663850
Alignment:
Q  18 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17663936 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 17663850  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 19246437 - 19246351
Alignment:
Q  18 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19246437 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 19246351  T

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Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 33137714 - 33137629
Alignment:
Q  19 tcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 104  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  33137714 tcaatggtgagagatctagcagcaagcatgtaacacttttgtccactctttctgtgcaattgaaagctctgcatttcaacatatac 33137629  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 33136751 - 33136695
Alignment:
Q  285 ggaagtcagaaaacggtcccagacggtgtcggaatcggctgcagaacggaaagactt 341  Q
    ||||||||||||||| | ||| || |||||||||||||| |||||| | ||||||||    
T  33136751 ggaagtcagaaaacgattccacaccgtgtcggaatcggccgcagaatgaaaagactt 33136695  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 45526202 - 45526272
Alignment:
Q  27 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    |||||||||||||||||||| ||||||||| | |||||||||||| | |||||||||||||||||||||||    
T  45526202 gagagatctagcagcaagcatgtaacacttttttccactctttctatccaattgaaagctctgcatttcaa 45526272  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 35203174 - 35203248
Alignment:
Q  20 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcattt 94  Q
    |||||| |||||||||||||||||||| ||||||||| | |||||||||||| | |||||||| |||||||||||    
T  35203174 caatggagagagatctagcagcaagcatgtaacacttttttccactctttctatccaattgaatgctctgcattt 35203248  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 35295261 - 35295189
Alignment:
Q  25 gtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    ||||||||||||||||||||||  |||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  35295261 gtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 35295189  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 35476988 - 35477062
Alignment:
Q  20 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcattt 94  Q
    |||||| |||||||||||||||||||| ||||||||| |  ||||||||||| | |||||||| |||||||||||    
T  35476988 caatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatccaattgaaggctctgcattt 35477062  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 8640315 - 8640380
Alignment:
Q  27 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcat 92  Q
    |||||||||||||||||||| ||||||||| | |||||||||||| | |||||||| |||||||||    
T  8640315 gagagatctagcagcaagcatgtaacacttttttccactctttctgtccaattgaacgctctgcat 8640380  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 35216965 - 35217042
Alignment:
Q  20 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    |||||| |||||||||||||| ||||| ||||||||| | |||||||||||| | |||||| || |||||||||||||    
T  35216965 caatggagagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaa 35217042  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 35272922 - 35272993
Alignment:
Q  28 agagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaaca 99  Q
    ||||||||||||| ||||| ||||||||| | |||||||||||| |  ||||||| ||||||||||||||||    
T  35272922 agagatctagcagaaagcatgtaacacttttttccactctttctctctaattgaatgctctgcatttcaaca 35272993  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 35206425 - 35206495
Alignment:
Q  27 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    |||||||||||||| ||||| ||||||||| | |||||||||||| | |||||| || |||||||||||||    
T  35206425 gagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaa 35206495  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 35213583 - 35213653
Alignment:
Q  27 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    ||||||||||||||||||||  ||||| || | |||||| ||||| | |||||||||||||||||||||||    
T  35213583 gagagatctagcagcaagcatataacatttttttccactttttctctccaattgaaagctctgcatttcaa 35213653  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 35222780 - 35222866
Alignment:
Q  18 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 104  Q
    |||||||  |||||||||||||||||||| |  |||||| | |||||||||||| | |||||||| |||||  ||||||||||||||    
T  35222780 atcaatgtcgagagatctagcagcaagcatgacacacttttttccactctttctatccaattgaacgctcttaatttcaacatatac 35222866  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 35228634 - 35228684
Alignment:
Q  193 tcgatgatgatagggcgatcagatagagccatgtagagaccttttttggta 243  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||||||    
T  35228634 tcgatgatgatagggcgatcagatagagcaatatagagatcttttttggta 35228684  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 35192834 - 35192907
Alignment:
Q  20 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatt 93  Q
    |||||| ||||||||||||||||||||  |||||||| | ||||||||| || | |||||||||||||| ||||    
T  35192834 caatggagagagatctagcagcaagcatataacacttttttccactcttcctatccaattgaaagctctacatt 35192907  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 45534400 - 45534473
Alignment:
Q  21 aatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcattt 94  Q
    ||||| |||||||||||||||||||| ||||||||| |  ||||| ||||| |  |||||||||||||||||||    
T  45534400 aatggcgagagatctagcagcaagcatgtaacactttttcccactatttctatctaattgaaagctctgcattt 45534473  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 35228446 - 35228514
Alignment:
Q  28 agagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttca 96  Q
    ||||||||||||| |||||  |||||||||| |||||||||||| | ||||||||| |||| |||||||    
T  35228446 agagatctagcagaaagcatataacacttctttccactctttctctccaattgaaaactctacatttca 35228514  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 35145221 - 35145298
Alignment:
Q  20 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    |||||| |||||||||||||| || || ||||||||| | || ||||| ||| | |||||||||||| ||||||||||    
T  35145221 caatggcgagagatctagcagaaaccatgtaacacttttttctactctctctattcaattgaaagctttgcatttcaa 35145298  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 35273052 - 35273118
Alignment:
Q  177 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagaccttttttggta 243  Q
    ||||||| || | ||||||||||||| |||||||||||||||||| |  |||||| | |||||||||    
T  35273052 tacctttttatcatgatcgatgatgacagggcgatcagatagagcaagatagagatcctttttggta 35273118  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 35265360 - 35265421
Alignment:
Q  28 agagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctg 89  Q
    ||||||||||||| ||||| ||||||||| | |||||||||||| | |||||| || |||||    
T  35265360 agagatctagcagaaagcatgtaacacttttttccactctttctgtccaattggaaactctg 35265421  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 35253926 - 35254006
Alignment:
Q  17 catcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    |||||| ||||||||| || | | ||| || |||||| || | |||||||||||| | ||||||||| |||||||||||||    
T  35253926 catcaaaggtgagagaccttgaatcaatcatgtaacaattttttccactctttctatccaattgaaaactctgcatttcaa 35254006  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 35265523 - 35265623
Alignment:
Q  177 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagaccttttttggtaaaagtgtttgccggtgaaggagattgtaagatg 276  Q
    ||||||| || | ||||||||||||||||| |||||||| ||||| |  || ||| |||||||||||  || ||| ||  |||||||||| ||| |||||    
T  35265523 tacctttttatcatgatcgatgatgataggacgatcagagagagcgagatacagagcttttttggtaggagcgttggcaagtgaaggagagtgtgagatg 35265622  T
Q  277 a 277  Q
    |    
T  35265623 a 35265623  T

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