View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_high_20 (Length: 423)
Name: NF7737_high_20
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 44110306 - 44109905
Alignment:
| Q |
1 |
gtataaattgattcagttcatgaaatgcaaaccccataaattattgttgaaggaagctatttaacttaaccgcgccttattaaagttagacaagaaaatt |
100 |
Q |
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| T |
44110306 |
gtataaattgattcagttcatgaaatgcaaaccccataaattattgttgaaggaagctatttaacttaaccgcgccttattaaagttagacaagaaaatt |
44110207 |
T |
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| Q |
101 |
caattcctactnnnnnnnnntatttacttaaactgaatgtctcatcttctcatgtctgcaagttgattcttgacatccgccaggttcttcaaaggcacac |
200 |
Q |
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| T |
44110206 |
caattcctactaaaaaaa--tatttacttaaactgaatgtctcatcttctcatgtctgcaagttgattcttgacatccgccaggttcttcaaaggcacac |
44110109 |
T |
|
| Q |
201 |
catgtggtaaaaatggcgaacaggtaatctcgatctgctttaaaactcttgcattttgtaaaataaactcaacgaaactgattgaactataatatccatg |
300 |
Q |
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| T |
44110108 |
catgtggtaaaaatggcgaacaggtaatctcgatcagctttaaaactcttgcattttgtaaaataaactcaacgaaactgattgaactataatatccatg |
44110009 |
T |
|
| Q |
301 |
aaagtctgaaatctgaagcatcttgagagaagatttgaaacaataaggcactggaattaatgcatagtctctcttatcgacgattttgccaattccctaa |
400 |
Q |
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| T |
44110008 |
aaagtctgaaatctgaagcatcttgagagaagatttgaaacaataaggccctggaattaatgcatagtctctcttatcgacgattttgccaattccctaa |
44109909 |
T |
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| Q |
401 |
ataa |
404 |
Q |
| |
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|||| |
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| T |
44109908 |
ataa |
44109905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 259 - 402
Target Start/End: Complemental strand, 40276975 - 40276821
Alignment:
| Q |
259 |
taaaataaactcaacgaaactgattgaactata---------atatccatgaaagtctgaaatctgaagcatcttgagagaaga--tttgaaacaataag |
347 |
Q |
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| T |
40276975 |
taaaagaaactcaatgaaactgattgaactatatataatagaatatccatgaaaatttgaaatgtgaagtatcttgagagaagaaatttgaaacaataag |
40276876 |
T |
|
| Q |
348 |
gcactggaattaatgcatagtctctcttatcgacgattttgccaattccctaaat |
402 |
Q |
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| T |
40276875 |
gcactggaatttatgcatagtttctcttatccacgagtttgccaattccctaaat |
40276821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 362
Target Start/End: Original strand, 40450314 - 40450435
Alignment:
| Q |
241 |
taaaactcttgcattttgtaaaataaactcaacgaaactgattgaactataatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaa |
340 |
Q |
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||||| ||||||||||| ||||| |||||||| ||| |||| || || | |||||| | | | |||||| ||||||||||||||||||||||||||| |
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| T |
40450314 |
taaaagtcttgcattttttaaaacaaactcaatgaattggattccacgatcagatccatcatattttgaaatgtgaagcatcttgagagaagatttgaaa |
40450413 |
T |
|
| Q |
341 |
caataaggcactggaattaatg |
362 |
Q |
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||| |||||||||||||||||| |
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| T |
40450414 |
caacaaggcactggaattaatg |
40450435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 40450213 - 40450254
Alignment:
| Q |
146 |
cttctcatgtctgcaagttgattcttgacatccgccaggttc |
187 |
Q |
| |
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|||| |||| |||||||||| ||||||||||||||||||||| |
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| T |
40450213 |
cttcccatgcctgcaagttggttcttgacatccgccaggttc |
40450254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 40507017 - 40507058
Alignment:
| Q |
146 |
cttctcatgtctgcaagttgattcttgacatccgccaggttc |
187 |
Q |
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|||| |||| |||||||||| ||||||||||||||||||||| |
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| T |
40507017 |
cttcccatgcctgcaagttggttcttgacatccgccaggttc |
40507058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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