View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7737_high_21 (Length: 417)
Name: NF7737_high_21
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 402
Target Start/End: Original strand, 6226042 - 6226434
Alignment:
| Q |
12 |
gttgaactgagttgttcacaagtatgaatcgagtcgagtttgtacttgnnnnnnn-ttcatcacgaacttgagtcaagttttgaactgatctaaatttta |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
6226042 |
gttgaattgagttgttcacaagtatgaatcgaatcgagtttgtacttgtaaaaaaattcatcacgaatttaagtcaagttttaaactgatctaattttta |
6226141 |
T |
|
| Q |
111 |
acgaattgagccgaactaaactaagttttgaaccgtttatgtcaatgacaattgataattaattgatgttttacaagaatagattcattcgcgtataatt |
210 |
Q |
| |
|
| || | |||| |||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
6226142 |
atgagtcgagctaaactgaactaagttttaaactgtttatgtcaatgacaattgataatcaattgatattttatgagaatagattcattcgtatataatt |
6226241 |
T |
|
| Q |
211 |
acatataagagagtaaaacgtgatctttcaccatttaaactc-ctttatttaaaaaacaatgtgtttctctcttgttgaatgatgagagattatgtttta |
309 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
6226242 |
acatatgagagagtaaaatgtgatctttcaccatttaaactcactttatttaaaaaataatgtgtttctctcttattgaatgatgagagattatattttc |
6226341 |
T |
|
| Q |
310 |
ctctcatgtataaattacacccgagaagattcattcttgatgttttacccgatgataatctttatcaatactattgatatgctttaccatatc |
402 |
Q |
| |
|
| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6226342 |
ccctcatatataaatcacacatgagaagattcattcttgatgttttacccgatgataatctttatcaatactattgatatgctttaccatatc |
6226434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University