View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7737_high_24 (Length: 403)
Name: NF7737_high_24
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_high_24 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 22744401 - 22744018
Alignment:
| Q |
19 |
aacacggccgaggcacaccaactgcctttgacccatgctccaattttctccattctcagtaactgcagaactcaggatggatgaatatagtaatacatcg |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22744401 |
aacacgaccgaggcacaccaactgcctttgacccatgctccaattttctccattctcagtaactgcagaactcaggatggatgaatatagtaatacatcg |
22744302 |
T |
|
| Q |
119 |
catgaaattgacttctaatatttagtataaacttcatatgccccttattaagatggatgnnnnnnncgtcatttaatcaagaatggagtgagtttttatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
22744301 |
catgaaattgacttctaatatttagtataaacttcatatgccccttattaagatggatgaaaaaaacgtca-ttaatctagaatggagtgagtttttatt |
22744203 |
T |
|
| Q |
219 |
tgcttaaagttttgagaagtcaaacctgtggagtccagctttccttctttcttcctcacttcatcaccaagttgacacatatctagagcctgaaatattt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22744202 |
tgcttaaagttttgagaagtcaaacctgtggagtgcagctttccttctttcttcctcacttcatcaccaagttgacacatatctagagcctgaaatattt |
22744103 |
T |
|
| Q |
319 |
gataaaatatattaatttgtataacttgcagtaaagggatcagttatttctcattgtcaagaagaattacctcccaaatctgttc |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22744102 |
gataaaatatattaatttgtataacttgcagtaaagggatcagttatttctcattgtcaagaagaattacctcccaaatctgttc |
22744018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 219 - 367
Target Start/End: Original strand, 22666799 - 22666946
Alignment:
| Q |
219 |
tgcttaaagttttgagaagtcaaacctgtggagtccagctttccttctttcttcctcacttcatcaccaagttgacacatatctagagcctgaaatattt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||| |
|
|
| T |
22666799 |
tgcttaaagttttgagaagtcaaacctgtagagtcaagctttccttctttcttcctcacttcatctccaagttggcacatatctagagcctaaaacattt |
22666898 |
T |
|
| Q |
319 |
gataaaatatattaatttgtataacttgcagtaaagggatcagttattt |
367 |
Q |
| |
|
| ||||||| | || |||||||||||| | |||| ||||| ||||||| |
|
|
| T |
22666899 |
cacaaaatat-tgaaattgtataacttgaactaaaaggatcggttattt |
22666946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 219 - 367
Target Start/End: Original strand, 22723438 - 22723585
Alignment:
| Q |
219 |
tgcttaaagttttgagaagtcaaacctgtggagtccagctttccttctttcttcctcacttcatcaccaagttgacacatatctagagcctgaaatattt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||| |
|
|
| T |
22723438 |
tgcttaaagttttgagaagtcaaacctgtagagtcaagctttccttctttcttcctcacttcatctccaagttggcacatatctagagcctaaaacattt |
22723537 |
T |
|
| Q |
319 |
gataaaatatattaatttgtataacttgcagtaaagggatcagttattt |
367 |
Q |
| |
|
| ||||||| | || |||||||||||| | |||| ||||| ||||||| |
|
|
| T |
22723538 |
cacaaaatat-tgaaattgtataacttgaactaaaaggatcggttattt |
22723585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 22722995 - 22723059
Alignment:
| Q |
19 |
aacacggccgaggcacaccaactgcctttgacccatgctccaattttctccattctcagtaactg |
83 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22722995 |
aacacgtccgaggcagaccaactgtctttgccccatgctccaattttctccattctcagtaactg |
22723059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 22666104 - 22666183
Alignment:
| Q |
19 |
aacacggccgaggcacaccaactgcctttgacccatgctccaattttctccattctcagtaactg-cagaactcaggatg |
97 |
Q |
| |
|
|||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
22666104 |
aacacgtccgaggcagaccaactgtcgctgacccatgctccaattttctccattctcagtaactgccagaactcatgatg |
22666183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 41435003 - 41435050
Alignment:
| Q |
35 |
accaactgcctttgacccatgctccaattttctccattctcagtaact |
82 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
41435003 |
accaactgcctttgacccatgctccaattctcaccattctcactaact |
41435050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 14237120 - 14237173
Alignment:
| Q |
29 |
aggcacaccaactgcctttgacccatgctccaattttctccattctcagtaact |
82 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
14237120 |
aggcaaaccaactgcctctgacccatgctccaattctcaccattctcactaact |
14237173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 14378106 - 14378053
Alignment:
| Q |
29 |
aggcacaccaactgcctttgacccatgctccaattttctccattctcagtaact |
82 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
14378106 |
aggcaaaccaactgcctctgacccatgctccaattctcaccattctcactaact |
14378053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 41448293 - 41448340
Alignment:
| Q |
35 |
accaactgcctttgacccatgctccaattttctccattctcagtaact |
82 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
41448293 |
accaattgcctttgacccatgctccaattctcaccattctcactaact |
41448340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 14377871 - 14377803
Alignment:
| Q |
233 |
agaagtcaaacctgtggagtccagctttccttctttcttcctcacttcatcaccaagttgacacatatc |
301 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| ||||| || |||||||| || ||||||||| |||| |
|
|
| T |
14377871 |
agaagacaaacctgaagagtcaagctttccttcattctttctaacttcatctcccagttgacacttatc |
14377803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 32118127 - 32118179
Alignment:
| Q |
249 |
gagtccagctttccttctttcttcctcacttcatcaccaagttgacacatatc |
301 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| || ||||||||| |||| |
|
|
| T |
32118127 |
gagtcaagctttccttctttctttctaacttcatctcccagttgacacttatc |
32118179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University