View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_high_26 (Length: 377)
Name: NF7737_high_26
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 4825078 - 4825437
Alignment:
| Q |
1 |
tttttatttttcatcgttcatatcgctcgttcatctcgttcatctttcatcttcacacaaatcaaatctgaacccaaatctcactaaccaaatcaacaaa |
100 |
Q |
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| T |
4825078 |
tttttatttttcatcgttcatatcgctcgttcatctcgttcatccttcatcttcacataaacc----------ctaaatctcactaaccaaatcaacaaa |
4825167 |
T |
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| Q |
101 |
tcaatacgaaccctaactcctcaatctcattctcgaaccctaactcctcaatctcgaacctaaatattaaaatccaatctcgaaccctaattcaatctgt |
200 |
Q |
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| T |
4825168 |
tcattccgaaccctaactcctcaatctcattctcgaaccctaactcctcaatctcaaacctaaatattaaaatccaatctcgaaccctaattcaatctgt |
4825267 |
T |
|
| Q |
201 |
tctcgaacccaattcgttctcattcactgtttccaaatggattggccatcgtgattctgcaattcgacattcactgtaagttcttgaaccctaatttgaa |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4825268 |
tctcgaacgcaattcgttctcattcactgtttccaaatggattggccatcgtgattctgcaattcgacattcactgtaagttcttgaaccctaatttgaa |
4825367 |
T |
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| Q |
301 |
ctcgttttggtcccaattcattttgatactaagttctcattcacgtgcatcttttccattgttcttctca |
370 |
Q |
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| T |
4825368 |
ctcgttttggtcccaatttattttgatactaagttctcattcacgtgcatcttttccattgttgttctca |
4825437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 175 - 345
Target Start/End: Complemental strand, 7709469 - 7709292
Alignment:
| Q |
175 |
caatctcgaaccctaattcaatctgttctcgaacccaattcgttctcattcactgt----------ttccaaatggattggccatcgtgattctgcaatt |
264 |
Q |
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| T |
7709469 |
caatctcgaatcctaattcaatctgttctcgaacccaaatcattctcattcactatacttctcgatttctaaatggattggccaccatgattccgaaatt |
7709370 |
T |
|
| Q |
265 |
cgacattcactgtaagttcttgaaccctaatttgaactcgttttggtcccaattcattttgatactaagttctcattcacg |
345 |
Q |
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| T |
7709369 |
cgacattcaccgtaagttctcgaacc---atttgaactcgttttggtcccaatttgttttgacactaagctctcattcacg |
7709292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 40394637 - 40394673
Alignment:
| Q |
230 |
tttccaaatggattggccatcgtgattctgcaattcg |
266 |
Q |
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| T |
40394637 |
tttccaaatggattggccatcgtgcttctccaattcg |
40394673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 17165421 - 17165369
Alignment:
| Q |
230 |
tttccaaatggattggccatcgtgattctgcaattcgacattcactgtaagtt |
282 |
Q |
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| T |
17165421 |
tttccaaatggattggccaccgtgattctgcaattcgacattcactgtaagtt |
17165369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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