View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_high_27 (Length: 367)

Name: NF7737_high_27
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_high_27
NF7737_high_27
[»] chr8 (2 HSPs)
chr8 (17-350)||(18318246-18318579)
chr8 (171-214)||(32152209-32152252)
[»] chr3 (1 HSPs)
chr3 (166-235)||(513426-513495)
[»] chr1 (2 HSPs)
chr1 (166-233)||(33161431-33161498)
chr1 (164-214)||(15837976-15838026)
[»] chr7 (3 HSPs)
chr7 (167-233)||(10168806-10168872)
chr7 (167-233)||(10176331-10176397)
chr7 (180-236)||(15091346-15091402)
[»] chr4 (5 HSPs)
chr4 (166-228)||(6007663-6007725)
chr4 (165-222)||(1547461-1547518)
chr4 (164-229)||(2460593-2460658)
chr4 (161-233)||(548246-548318)
chr4 (168-232)||(566623-566687)
[»] chr5 (3 HSPs)
chr5 (171-233)||(41900250-41900312)
chr5 (166-226)||(17205954-17206014)
chr5 (284-312)||(17206980-17207008)
[»] chr6 (1 HSPs)
chr6 (166-214)||(28935571-28935619)


Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 18318579 - 18318246
Alignment:
Q  17 agagatttggcagagaagcatattgaggttaactttgaagtggtatgtgaggtgaagagagtggaagttggagaatctatctaagaggcttgatagagaa 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18318579 agagatttggcagagaagcatatttaggttaactttgaagtggtatgtgaggtgaagagagtggaggttggagaatctatctaagaggcttgatagagaa 18318480  T
Q  117 ggaatgaaacggatatttatttgatggaaccatgtgactttgctgactttgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaa 216  Q
    |||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18318479 ggaacgaaacggatatttatttaatggaaccatgcaactttgctgactttgagtgagaatcggagactgttggtgacggtgagaaactgtttagagacaa 18318380  T
Q  217 cggatagagatttcaagcaattacggttgtagtagtactcgtcttccccgtcgtagtcattgaggaggaatttgaagatagatttccaacattcattggg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18318379 cggatagagatttcaagcaattacggttgtagtagtactcgtcttccccgtcgtagtcattgaggaggaatttgaagatagatttccaacattcattggg 18318280  T
Q  317 tagataaatttcagcttctagagttgcacccatt 350  Q
    ||||||||||||||||||||||||||||||||||    
T  18318279 tagataaatttcagcttctagagttgcacccatt 18318246  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 32152209 - 32152252
Alignment:
Q  171 gagaatcggagactgttggtgatggtgagaaactgtttagagac 214  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagac 32152252  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 513495 - 513426
Alignment:
Q  166 tgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaagca 235  Q
    |||| |||||||||||| |||||||||||| ||| |||||||| |||||  |||| ||||||||||||||    
T  513495 tgagagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 33161431 - 33161498
Alignment:
Q  166 tgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaag 233  Q
    ||||||||||||| ||||| || ||||||| |||||||||||| ||||| | ||||||||| ||||||    
T  33161431 tgagtgagaatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 15838026 - 15837976
Alignment:
Q  164 tttgagtgagaatcggagactgttggtgatggtgagaaactgtttagagac 214  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||| |||||    
T  15838026 tttgagggagaatcggagacggttggtgatggagagaaactgtttggagac 15837976  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 10168872 - 10168806
Alignment:
Q  167 gagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaag 233  Q
    |||||| ||||| ||| |||||||||||| ||| |||||||| ||||||| ||||||||| ||||||    
T  10168872 gagtgataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 10176397 - 10176331
Alignment:
Q  167 gagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaag 233  Q
    |||||| ||||| ||| |||||||||||| ||| |||||||| ||||||| ||||||||| ||||||    
T  10176397 gagtgataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 15091402 - 15091346
Alignment:
Q  180 agactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaagcaa 236  Q
    |||||||||||||||| ||| |||||||| ||||| | ||| ||||| |||||||||    
T  15091402 agactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagcaa 15091346  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 6007663 - 6007725
Alignment:
Q  166 tgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatt 228  Q
    |||| ||||||||||||||||||||||||| ||| |||||||| ||||| | ||| |||||||    
T  6007663 tgagagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 1547518 - 1547461
Alignment:
Q  165 ttgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggata 222  Q
    ||||| ||||||||||||| ||||||||||| ||| || ||||| ||||||| |||||    
T  1547518 ttgagagagaatcggagacggttggtgatggagaggaattgtttggagacaagggata 1547461  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 2460593 - 2460658
Alignment:
Q  164 tttgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagattt 229  Q
    |||||| |||||||||||||  |||||||||| ||| |||||||| ||||| | ||| ||||||||    
T  2460593 tttgagagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagattt 2460658  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 548246 - 548318
Alignment:
Q  161 gactttgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaag 233  Q
    |||| ||||||||| | | ||| | |||||||||| |||||||||||| |||||||| || ||||| ||||||    
T  548246 gactgtgagtgagagtggaagattattggtgatggagagaaactgttttgagacaacagagagagacttcaag 548318  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 566623 - 566687
Alignment:
Q  168 agtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaa 232  Q
    ||||| ||||| ||||||| |||||||| |||||||||||| ||||| | ||| ||||| |||||    
T  566623 agtgaaaatcgaagactgtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 566687  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 41900312 - 41900250
Alignment:
Q  171 gagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaag 233  Q
    |||||||| ||| |||||||||||| |||||||||||| ||||| |  || ||||||||||||    
T  41900312 gagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaag 41900250  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 17205954 - 17206014
Alignment:
Q  166 tgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagaga 226  Q
    ||||||||||||||| ||||| |||||| | ||| |||||||| ||||| | |||||||||    
T  17205954 tgagtgagaatcggaaactgtcggtgatagagagtaactgtttggagacgagggatagaga 17206014  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 17207008 - 17206980
Alignment:
Q  284 gaatttgaagatagatttccaacattcat 312  Q
    |||||||||||||||||||||||||||||    
T  17207008 gaatttgaagatagatttccaacattcat 17206980  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 28935571 - 28935619
Alignment:
Q  166 tgagtgagaatcggagactgttggtgatggtgagaaactgtttagagac 214  Q
    |||||| ||||||||||||||||||||| | ||| |||||||| |||||    
T  28935571 tgagtgtgaatcggagactgttggtgatagagaggaactgtttcgagac 28935619  T

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