View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_high_29 (Length: 354)
Name: NF7737_high_29
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 53004479 - 53004153
Alignment:
| Q |
17 |
gtgtgtcatataataactacaaagaatcaagatatacataattgaactaaggaaaaagattccattgtacacctataataatatactatgggagattcca |
116 |
Q |
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| T |
53004479 |
gtgtgtcatataataactacaaagaatcaagatatacataattgaactaaggaaaaagattccattgtacacctataataatatactatgggagattcca |
53004380 |
T |
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| Q |
117 |
cagatagtggattgcaaacctaagtccactatccatcatttgtatgcgatagtaactcatgaaagcatcattgttgttgttcttttggcattaatgatcg |
216 |
Q |
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| T |
53004379 |
cagatagtggattgcaaacctaagtccactatccatcatttgtatgcgatagtaactcatgaaagcatcattgttgttgttcttttggcattaatgatcg |
53004280 |
T |
|
| Q |
217 |
atggccatgtaaagcaatttctatcaaagaaaagtattgaaaataatgaaggacgtggtagggtgttcnnnnnnnnnnnatgcgatactattaatttaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53004279 |
atggccatgtaaagcaatttctatcaaagaaaagtattgaaaataatgaaggacgtggtagggtgttcttcttttttttatgcgatactattaatttaaa |
53004180 |
T |
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| Q |
317 |
gatttcaaagtgctgttatagtttctt |
343 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
53004179 |
gatttcaaagtgctattatagtttctt |
53004153 |
T |
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