View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_high_30 (Length: 353)
Name: NF7737_high_30
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 105 - 280
Target Start/End: Complemental strand, 35048656 - 35048481
Alignment:
| Q |
105 |
ccctttggtcatgtatgattgccaatggcattgttgcctaatgtcacaagagggataaggggtttccattctagccctccataccctatttcctaatcca |
204 |
Q |
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| T |
35048656 |
ccctttggtcatgtatgattgccaatggcattgttgcctaatgtcacaagagggataaggggtttccattctagccctccataccctatgtcctaatcca |
35048557 |
T |
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| Q |
205 |
cacctacatcacattaaagtgtctcttactttacctaaaaaaggaagaaaatgatgcatgactttaatgtgtattt |
280 |
Q |
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| T |
35048556 |
cacctacatcacattaaagtgtctcttactttacctaaaaaaggaagaaaatgatgcatgactttaatgtgtattt |
35048481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 35048713 - 35048646
Alignment:
| Q |
18 |
atgtgctgggtggagagcagaattctatattcaatatatcttggataatttatctccccctttggtca |
85 |
Q |
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| T |
35048713 |
atgtgctgggtggagagcagaattctatattcaatatatcttggataatttatctccccctttggtca |
35048646 |
T |
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