View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_high_33 (Length: 337)

Name: NF7737_high_33
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_high_33
NF7737_high_33
[»] chr3 (3 HSPs)
chr3 (7-325)||(46696468-46696795)
chr3 (99-175)||(3267067-3267143)
chr3 (214-276)||(17512186-17512245)
[»] chr2 (2 HSPs)
chr2 (33-179)||(40832761-40832907)
chr2 (82-152)||(41231313-41231384)
[»] chr1 (3 HSPs)
chr1 (90-179)||(14244630-14244721)
chr1 (99-180)||(5355217-5355298)
chr1 (113-178)||(24763534-24763599)
[»] chr4 (2 HSPs)
chr4 (87-157)||(45497630-45497701)
chr4 (196-276)||(18148451-18148528)
[»] chr7 (3 HSPs)
chr7 (114-179)||(22616301-22616366)
chr7 (90-157)||(38672434-38672502)
chr7 (99-157)||(26921747-26921805)
[»] chr8 (2 HSPs)
chr8 (90-157)||(15889417-15889485)
chr8 (90-181)||(43187774-43187866)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 46696795 - 46696468
Alignment:
Q  7 ttggtggtgaggattttggtgggtcagatacgatggaaaagaaagagaatgcacaagatgattgtaaaggttttagggaatttacaaaactgccctattt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46696795 ttggtggtgaggattttggtgggtcagatacgatggaaaagaaagagaatgcacaagatgattgtaaaggttttagggaatttacaaaactgccctattt 46696696  T
Q  107 tatggatgaaatgtcaaaactatccatgtttttgtatttgtgtcaaatattatgtgcttagttatcatttctcaagatttaattcaccctaca------- 199  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  46696695 tatggatgaaatgtcaaaactattcatgttgtagtatttgtgtcaaatattatgtgcttagttatcatttctcaagatttaattcaccctacacgtccta 46696596  T
Q  200 --cgtcatggatgttgtgcttttatatgtaataatatacacctgtatgtaactaatgaaagtgacgatattatgcataattccacaaaagtataatactt 297  Q
      |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46696595 cacgtcatggatgtcgtgcttttatatgtaataatatacacctgtatgtaactaatgaaagtgacgatattatacataattccacaaaagtataatactt 46696496  T
Q  298 tttcacttcccaatattatcaacaaaac 325  Q
    ||||||||||||||||||||||||||||    
T  46696495 tttcacttcccaatattatcaacaaaac 46696468  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 3267143 - 3267067
Alignment:
Q  99 ccctattttatggatgaaatgtcaaaactatccatgtttttgtatttgtgtcaaatattatgtgcttagttatcatt 175  Q
    ||||| ||||||| ||||||||| |||||||||||| | ||||||||||||| |||  | |||| ||| ||||||||    
T  3267143 ccctaatttatggttgaaatgtctaaactatccatggtgttgtatttgtgtccaatcatttgtgtttaattatcatt 3267067  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 17512245 - 17512186
Alignment:
Q  214 tgcttttatatgtaataatatacacctgtatgtaactaatgaaagtgacgatattatgcataa 276  Q
    |||||||||||||||||   || || |||||||||||| |||||||||||||||||| |||||    
T  17512245 tgcttttatatgtaata---tagacttgtatgtaactattgaaagtgacgatattatacataa 17512186  T

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Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 40832907 - 40832761
Alignment:
Q  33 gatacgatggaaaagaaagagaatgcacaagatgattgtaaaggttttagggaatttacaaaactgccctattttatggatgaaatgtcaaaactatcca 132  Q
    ||||||||||| ||||||||||||  | || ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  40832907 gatacgatggagaagaaagagaatagagaaaatgattgcaagggttttagggattttacaaaactgccctattttatggatgaaatgtcaaaactaccca 40832808  T
Q  133 tgtttttgtatttgtgtcaaatattatgtgcttagttatcatttctc 179  Q
    || | ||||||||||||| ||||||||||| | | ||||||||||||    
T  40832807 tggtattgtatttgtgtccaatattatgtgttcatttatcatttctc 40832761  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 41231313 - 41231384
Alignment:
Q  82 gggaatttacaaaactgccct-attttatggatgaaatgtcaaaactatccatgtttttgtatttgtgtcaa 152  Q
    |||| |||||||||||||||  | ||||||| ||||||||||||||  |||||| | |||||||||||||||    
T  41231313 gggattttacaaaactgcccccactttatggttgaaatgtcaaaacagtccatggtgttgtatttgtgtcaa 41231384  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 14244721 - 14244630
Alignment:
Q  90 acaaaactgccctat--tttatggatgaaatgtcaaaactatccatgtttttgtatttgtgtcaaatattatgtgcttagttatcatttctc 179  Q
    |||||||||||| ||  ||||||||||||||||| ||||| |||||| | ||||||||||||| |||||| |||| ||||||||||||||||    
T  14244721 acaaaactgccccatgctttatggatgaaatgtccaaactgtccatggtgttgtatttgtgtccaatattttgtgtttagttatcatttctc 14244630  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 5355298 - 5355217
Alignment:
Q  99 ccctattttatggatgaaatgtcaaaactatccatgtttttgtatttgtgtcaaatattatgtgcttagttatcatttctca 180  Q
    |||| |||||||| | ||||| | |||||||||||| | |||||||||||||||||||| |||| | | |||||||||||||    
T  5355298 ccctgttttatggttaaaatggctaaactatccatggtgttgtatttgtgtcaaatattttgtgttcatttatcatttctca 5355217  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 24763599 - 24763534
Alignment:
Q  113 tgaaatgtcaaaactatccatgtttttgtatttgtgtcaaatattatgtgcttagttatcatttct 178  Q
    ||||||||||||| |||||||| | ||||||||||||| |||| | |||| || ||||||||||||    
T  24763599 tgaaatgtcaaaattatccatggtgttgtatttgtgtctaataatttgtgtttggttatcatttct 24763534  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 45497701 - 45497630
Alignment:
Q  87 tttacaaaactgccct-attttatggatgaaatgtcaaaactatccatgtttttgtatttgtgtcaaatatt 157  Q
    ||||||||| |||||| ||||||||| ||||||||||||| | |||||| | |||| |||||||||||||||    
T  45497701 tttacaaaattgcccttattttatggttgaaatgtcaaaattgtccatgatgttgtttttgtgtcaaatatt 45497630  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 18148528 - 18148451
Alignment:
Q  196 tacacgtcatggatgttgtgcttttatatgtaataatatacacctgtatgtaactaatgaaagtgacgatattatgcataa 276  Q
    |||||||||||||| |  |||||||||||||||||   || || |||||||||||  |||||||||||||||||| |||||    
T  18148528 tacacgtcatggatatcctgcttttatatgtaata---tagacttgtatgtaactgttgaaagtgacgatattatacataa 18148451  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 22616366 - 22616301
Alignment:
Q  114 gaaatgtcaaaactatccatgtttttgtatttgtgtcaaatattatgtgcttagttatcatttctc 179  Q
    ||||| || |||||| ||||| | | |||||||||||||||||| |||| ||||||||||||||||    
T  22616366 gaaatatccaaactacccatggtgtcgtatttgtgtcaaatattttgtgtttagttatcatttctc 22616301  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 38672502 - 38672434
Alignment:
Q  90 acaaaactg-ccctattttatggatgaaatgtcaaaactatccatgtttttgtatttgtgtcaaatatt 157  Q
    ||||||||| |||| |||||||  ||||||||| |||||||||||| | ||| ||||||||||||||||    
T  38672502 acaaaactgtccctgttttatgagtgaaatgtccaaactatccatgatgttgaatttgtgtcaaatatt 38672434  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 26921805 - 26921747
Alignment:
Q  99 ccctattttatggatgaaatgtcaaaactatccatgtttttgtatttgtgtcaaatatt 157  Q
    ||||| ||||||| |||||| || |||||| ||||| | ||||||||||||||||||||    
T  26921805 ccctaatttatggttgaaatatccaaactacccatgatattgtatttgtgtcaaatatt 26921747  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 15889417 - 15889485
Alignment:
Q  90 acaaaactg-ccctattttatggatgaaatgtcaaaactatccatgtttttgtatttgtgtcaaatatt 157  Q
    ||||||||| |||| |||||||  ||||||||| |||||||||||| | ||| ||||||||||||||||    
T  15889417 acaaaactgtccctgttttatgagtgaaatgtccaaactatccatgatgttgaatttgtgtcaaatatt 15889485  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 43187774 - 43187866
Alignment:
Q  90 acaaaactg-ccctattttatggatgaaatgtcaaaactatccatgtttttgtatttgtgtcaaatattatgtgcttagttatcatttctcaa 181  Q
    ||||||||| |||| |||||||  ||||||||| |||||||||||| | ||| || ||||||||||||| |||| | | |||||||| |||||    
T  43187774 acaaaactgtccctgttttatgagtgaaatgtccaaactatccatgatgttgaatctgtgtcaaatattttgtgttcatttatcattgctcaa 43187866  T

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