View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7737_high_36 (Length: 319)
Name: NF7737_high_36
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_high_36 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 183821 - 183528
Alignment:
| Q |
18 |
atatgcagtactcgcgagctacatgagacattccagggtcttgactaaaaaacattagtattttatctgtgaatatccacacaagagatattggaaaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183821 |
atatgcagtactcgcgagctacatgagacattccagggtcttgactaaaaaacattagtattttatctgtgaatatccacacaagagatattggaaaaca |
183722 |
T |
|
| Q |
118 |
aactacagttagagttaatattgcacagcaagtgtagtttccaagttttccatactcttctgcaccaaaggtttgtccacatagtgtttccaatgcacca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183721 |
aactacagttagagttaatattgcacagcaagtgtagtttccaagttttccatactcttctgcaccaaaggtttgtccacatagtgtttccaatgcacca |
183622 |
T |
|
| Q |
218 |
gccattcccaactgcaatgcaaacatgaaacacatactaaggataaccattatatttatactatgaagcattgatatagatgacacaaacacca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
183621 |
gccattcccaactgcaatgcaaacatgaaacacatactaaggataaccattatatttatactatgaagcattgatatagatgacacagacacca |
183528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 34015022 - 34014982
Alignment:
| Q |
190 |
ttgtccacatagtgtttccaatgcaccagccattcccaact |
230 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
34015022 |
ttgtccacatagtgttgccaatgcactagccattcctaact |
34014982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University