View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_high_37 (Length: 317)

Name: NF7737_high_37
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_high_37
NF7737_high_37
[»] chr6 (1 HSPs)
chr6 (1-299)||(7250001-7250299)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 7250001 - 7250299
Alignment:
Q  1 ttgcaaaatgtgattcatcacgcgaaccgcatggaggcttagaggatgatggtgtatcgtctttttccttcaaacataaaactcaaacacaagaagggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7250001 ttgcaaaatgtgattcatcacgcgaaccgcatggaggcttagaggatgatggtgtatcgtctttttccttcaaacataaaactcaaacacaagaagggat 7250100  T
Q  101 gttaaacaatgaaagaatatcatttgaatcaagaaatagtaatatgcaagagaagagagtctcatcagctacaacttcaagcactgtgagtggaaataaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7250101 gttaaacaatgaaagaatatcatttgaatcaagaaatagtaatatgcaagagaagagagtctcatcagctacaacttcaagcactgtgagtggaaataaa 7250200  T
Q  201 gactttgttggtttgaatcaaagcctaagtggtcgaactcggataaggtctcctacaaaggcagatagatgcaaatttgatctagaaaggaaaccttca 299  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7250201 gactttgtttgtttgaatcaaagcctaggtggtcgaactcggataaggtctcctacaaaggcagatagatgcaaatttgatctagaaaggaaaccttca 7250299  T

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