View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7737_high_38 (Length: 305)
Name: NF7737_high_38
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_high_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 34645755 - 34646029
Alignment:
| Q |
16 |
atgagaggatatacaaacatatggtatggaaaatctcaaatttaatgttatgattgtcagaagtttggtcattatgcttcaaaatgtagatttgccaaga |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34645755 |
atgagaggatattcaaacatatggtatggaaaatctcaaatttaatgttatgattgtcagaagtttggtcattatgcttcaaaatgtagatttgccaaga |
34645854 |
T |
|
| Q |
116 |
atagggtcgacgagaagaccaactatgtagaagaaaaggatgagaagttttaaatagttctggcagcacatggaagtatcaaaggaaccttacaaaattc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34645855 |
atagggtcgacgagaagaccaactatgtagaagaaaaggatgagaagttttaaatagttctggcagcacatggaagtatcgaaggaaccttacaaaattc |
34645954 |
T |
|
| Q |
216 |
atggtatattgacactggtgcaagcaaccatatgtgtggaaataggagcatgttcgtgaaacttgatgaatcatt |
290 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34645955 |
atggtatattgacactcgtgcaagcaaccatatgtgtggaaataggagcatgttcgtaaaacttgatgaatcatt |
34646029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 4890660 - 4890596
Alignment:
| Q |
224 |
ttgacactggtgcaagcaaccatatgtgtggaaataggagcatgttcgtgaaacttgatgaatca |
288 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||||||||| || | |||||||||||| |
|
|
| T |
4890660 |
ttgacactggtgcaagcaatcatatgtgtgggaaaaggagcatgtttgtagagcttgatgaatca |
4890596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University