View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_high_40 (Length: 300)
Name: NF7737_high_40
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 18662305 - 18662047
Alignment:
| Q |
20 |
ccctaaagacaatttttagaaaaaccctaatactactcctaactaccaaaaaatatataacacggacgaccccacactccttattagtccttagtgcaag |
119 |
Q |
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| T |
18662305 |
ccctaaaaacactttttagcaaaaccctaatactactcctaactaccaaaaaatatataacatagacgaccccatactccttattagtccttagtgcaag |
18662206 |
T |
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| Q |
120 |
atatggacgaccccatactccttattactccttagtgctagacctccaaatcccaccacaaagactcgcgtcaagcattgaaagtttcaaacacgacatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18662205 |
atatggacgaccccatactccttattactccttagtgctagacctccaaatcccaccacaaagactcgcgtcaagcattgaaagtttcaaacacgacatt |
18662106 |
T |
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| Q |
220 |
acaaatggacatcaccttcaacaaataaagcatacactcatacacactatatatactta |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18662105 |
acaaatggacatcaccttcaacaaataaagcatacactcatacacactatatatactta |
18662047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 21127803 - 21127704
Alignment:
| Q |
120 |
atatggacgaccccatactccttattactccttagtgcta-gacctccaaatcccaccacaaagactcgcgtcaagcattgaaagtttcaaacacgacat |
218 |
Q |
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||||||||||||||||||||||||||| ||||| |||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21127803 |
atatggacgaccccatactccttattagtcctt-gtgctaagacttccaattcccaccacaaagactcgcgtcaaccattgaaagtttcaaacacgacat |
21127705 |
T |
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