View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7737_high_5 (Length: 584)
Name: NF7737_high_5
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 441; Significance: 0; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 573
Target Start/End: Original strand, 6233425 - 6233980
Alignment:
| Q |
17 |
cttttatcccaaacaaaacttattgcaagatgacacagacatgatccatcaaacataattagttcttgtttgtagaatcctttgtagaatcaacagctcc |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6233425 |
cttttatcccaaacaaaacttattccaagatgacacagacatgatccatcaaacataattagttcttgtttgtagaatcctttgtagaatcaacagctcc |
6233524 |
T |
|
| Q |
117 |
ttgagcctttgcttgcatctgctgaccagtctacacataataaatnnnnnnntataagcaacatttttacattgaggccatgaatttttgctataaatct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6233525 |
ttgagcctttgcttgcatctgctgaccagtctacacataataaa--aaaaaatataagcaacatttttacatttaggccatgaatttttgctataaatct |
6233622 |
T |
|
| Q |
217 |
atatcatacaannnnnnnnaactacaaattgctacctcttgcattgattctttggccgactgaacagcattgctagccttgtccatcatgttgctagcct |
316 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6233623 |
atatcatacaattttttttaactacaaattgctacctcttgcattgattctttggccgactgagcagcattgctagccttgtccatcatgttgctagcct |
6233722 |
T |
|
| Q |
317 |
tttcctattattcacacacaaaaaggttattatacaaaattgagtgcattcatatttagataaaatt-tttctcggagattaattataaaagcaaaattc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||||||||||||| |
|
|
| T |
6233723 |
tttcctattattcacacacaaaaaggttattatacaaaattgagtgcattcatatttagatatatttctttctcggagattaactataaaagcaaaattc |
6233822 |
T |
|
| Q |
416 |
actaactttaatttattaaaattatttgttaaatacaactaattctcgatctcataannnnnnnnagacattctcaataatttatttcatgaaaacttgc |
515 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6233823 |
actaacattaatttattaaaattatttgttaaatacaactaattctcgatctcataattttttttagacattctcaataatttatttcatgaaagcttgc |
6233922 |
T |
|
| Q |
516 |
tttatgaaaataaaagagtcatattagaaagtaaaaattacattaaataagggatatt |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6233923 |
tttatgaaaataaaagagtcatattagaaagtaaaaattacattaaataagggatatt |
6233980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 573
Target Start/End: Original strand, 6252373 - 6252934
Alignment:
| Q |
19 |
tttatcccaaacaaaacttattgcaagatgacacagacatgatccatcaaacataattagttcttgtttgtagaatcctttgtagaatcaacagctcctt |
118 |
Q |
| |
|
||||||| ||| ||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
6252373 |
tttatccaaaaaaaaacttattgaaagttgacatagacgtgatccatcaaacataattagttcttgtttgtagaatccttcgcagaatcaacagctcctt |
6252472 |
T |
|
| Q |
119 |
gagcctttgcttgcatctgctgaccagtctacacata--ataaatnnnnnnntataagcaacatttttacattgaggccatgaatttttgctataaatct |
216 |
Q |
| |
|
|||||||| | |||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
6252473 |
gagccttttcctgcatctgttgaccagtctagacataatataaaaaagaagatataagcaacatttttagatttaggccatgaaattttgctataaatct |
6252572 |
T |
|
| Q |
217 |
atatcat---acaannnnnnnnaactacaaattgctacctcttgcattgattctttggccgactgaacagcattgctagccttgtccatcatgttgctag |
313 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
6252573 |
atatcattagattttttttttaaacaacaaattgctacctcttgcattgattctttggcagactgagcagcattgctagccttgtccatcatgctgctag |
6252672 |
T |
|
| Q |
314 |
ccttttcctattattcacacacaaaaa-------ggttattatacaaaattgagtgcattcatatttagataaaatttttctcggagattaattataaaa |
406 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |||||||||| | ||||||| ||||||||||||| || |
|
|
| T |
6252673 |
ccttttcctattatccacacacaaaaaaaaaaatggttattatacaaaattgagtgaattaatatttagattatttttttcttggagattaattat--aa |
6252770 |
T |
|
| Q |
407 |
gcaaaattcactaactttaatttattaaaattatttgttaaatacaactaattctcgatctcataannnnnnnnagacattctcaataatttatttcatg |
506 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
6252771 |
gcaaaatccactaactttaatttattaaaattatttgttaaatacaactaattctcgatttcata--taaaaatagacattctcaataatttatttcatg |
6252868 |
T |
|
| Q |
507 |
aaaacttgctttatgaaaataaaagagtcatattagaaagtaaaaattacattaaataagggatatt |
573 |
Q |
| |
|
|| |||| |||||||||||| || ||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
6252869 |
aatacttaaattatgaaaataagggaatcatattggaaagtaaaaattacatt-tataagggatatt |
6252934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 25 - 573
Target Start/End: Original strand, 6238386 - 6238935
Alignment:
| Q |
25 |
ccaaacaaaacttattgcaagatgacacagacatgatccatcaaacataattagttcttgtttgtagaatcctttgtagaatcaacagctccttgagcct |
124 |
Q |
| |
|
||||| ||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
6238386 |
ccaaaaaaaacttattgaaagttgacatagacatgatccatcgaacataattagttcttgtttgtagaattctttgcagaatcagtagctccttgagcct |
6238485 |
T |
|
| Q |
125 |
ttgcttgcatctgctgaccagtctacacataataaatnnnnnnntataagcaacatttttacattgaggccatgaatttttgctataaatctatatcata |
224 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
6238486 |
ttgcttgcatttgctgaccagtctacacataataaa----aaaatataagtaacatttctacatttaggccatgaaattttgctataaatctataccata |
6238581 |
T |
|
| Q |
225 |
caa--nnnnnnnnaactacaaattgctacctcttgcattgattctttggccgactgaacagcattgctagccttgtccatcatgttgctagccttttcct |
322 |
Q |
| |
|
||| |||| |||||||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
6238582 |
caatttttttttccactaaaaattgctacctcttggattgattctttggcggactgagcagcattactagccttgtccatcatattgctagctttttcct |
6238681 |
T |
|
| Q |
323 |
attattcacac--acaaaa------aggttattatacaaaattgagtgcattcatatttagataaaatt-tttctcggagattaattataaaagcaaaat |
413 |
Q |
| |
|
||||| ||||| |||||| || |||||||||||||||||||| ||| ||||||||| | | || || ||| ||||||||||| ||||||||| |
|
|
| T |
6238682 |
attatccacacatacaaaaaataatagcttattatacaaaattgagtgaattaatatttagaaatatttcttcctcatagattaattat--aagcaaaat |
6238779 |
T |
|
| Q |
414 |
tcactaactttaatttattaaaattatttgttaaatacaactaattctcgatctcataannnnnnnnagacattctcaataatttatttcatgaaaactt |
513 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||| ||||||||||||||||||||| |
|
|
| T |
6238780 |
tcacttactttaatttattaaaattatttgttaaatacaactaattctcaatctcaaaa----aaatagatattctcgttaatttatttcatgaaaactt |
6238875 |
T |
|
| Q |
514 |
gctttatgaaaataaaagagtcatattagaaagtaaaaattacattaaataagggatatt |
573 |
Q |
| |
|
|| |||||||||||| ||| || | |||||||||||||||||||||||| | |||||||| |
|
|
| T |
6238876 |
gccttatgaaaataagagaatcgtgttagaaagtaaaaattacattaaacatgggatatt |
6238935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 47 - 561
Target Start/End: Original strand, 6258812 - 6259329
Alignment:
| Q |
47 |
tgacacagacatgatccatcaaacataattagttcttgtttgtagaatcctttgtagaatcaacagctccttgagcctttgcttgcatctgctgaccagt |
146 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
6258812 |
tgacatagacatgattcatcaaacataattagttcttgtttgtagaatccttagcagaatcaacagctccttgtgcctttgcctgcatctgctgaccagc |
6258911 |
T |
|
| Q |
147 |
ctacacataataaatnnnnnnntataagcaacatttttacattgaggccatgaatttttgctataaatctatatcatacaannnnnnnn--aactacaaa |
244 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| | ||||||||||||| || |||| |||||||||||| ||||||||| |
|
|
| T |
6258912 |
ctacacatgataaa-aaatatatataagcaacatttttacatgtaagccatgaatttttagtagaaatatatatcatacaatattttttttaactacaaa |
6259010 |
T |
|
| Q |
245 |
ttgctacctcttgcattgattctttggccgactgaacagcattgctagccttgtccatcatgttgctagccttttcctattattca--cacacaaa---- |
338 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
6259011 |
ttgctacctcttgcattgattctttggctgactgagcagcattgctagccttgtccatcatgttgctagccttttcctattatccacgcacacaaaaaaa |
6259110 |
T |
|
| Q |
339 |
----aaggttattatacaaaattgagtgcattcatatttagataaaatt-tttctcggagattaattataaaagcaaaattcactaactttaatttatta |
433 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||| | || |||||| ||||||||| ||||||||||| ||||| || |||||| | |
|
|
| T |
6259111 |
gaagaagtttattatacaaaattgagtgcattaatatttagatatatttcattctcg--aattaattat--aagcaaaattcgctaac-ttgatttataa |
6259205 |
T |
|
| Q |
434 |
aaattatttgttaaatacaactaattctcgatctcataannnnnnnnagacattctcaataatttatttcatgaaaacttgctttatgaaaataaaagag |
533 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||| | ||||||||||||| | | |
|
|
| T |
6259206 |
aaattatttgttaaataaaactaattatcgatctcatataaaaaaatagacattctcaataaattatttcatgaa----taatttatgaaaataagataa |
6259301 |
T |
|
| Q |
534 |
tcatattagaaagtaaaaattacattaa |
561 |
Q |
| |
|
||||||| ||||||||| |||||||||| |
|
|
| T |
6259302 |
tcatattcgaaagtaaacattacattaa |
6259329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 25 - 573
Target Start/End: Original strand, 6247200 - 6247764
Alignment:
| Q |
25 |
ccaaacaaaacttattgcaagatgacacagacatgatccatcaaacataattagttcttgtttgtagaatcctttgtagaatcaacagctccttgagcct |
124 |
Q |
| |
|
||||| ||||||| ||| ||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
6247200 |
ccaaaaaaaacttgttgaaagttgacatagacatgatccataaaaaataattagttcttgtttgtagaatctttcgcagaatcaacagctccttgagcct |
6247299 |
T |
|
| Q |
125 |
ttgcttgcatctgctgaccagtctacacata--ataaatnnnnnnntataagcaacatttttacattgaggccatgaatttttgctataaatctatatca |
222 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||| || ||||||||||||||| ||||||| |
|
|
| T |
6247300 |
ttgcctgcatctgctgaccagtctacacataatataaaaaaatatatataacaaacatttttacatttaggcaat-catttttgctataaatttatatca |
6247398 |
T |
|
| Q |
223 |
t-acaannnnnnnnaactacaaattgctacctcttgcattgattctttggccgactgaacagcattgctagccttgtccatcatgttgctagccttttcc |
321 |
Q |
| |
|
| | ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
6247399 |
taatttttttttttaactacaaatttctacctcttgcattgattctttggcagactgagcagcattgctagccttgtccatcaagttgctggccttttcc |
6247498 |
T |
|
| Q |
322 |
tattattcacacacaaaa-------aggttattataca-----aaattgagtgcattcatatttagata-----aaatt--tttctcggagattaattat |
402 |
Q |
| |
|
||| || |||||| |||| ||||||||||| | |||||||||||||| | |||| |||| | ||| || || ||||||||||||| |
|
|
| T |
6247499 |
tatgatccacacataaaataataataggttattataaaaattgaaattgagtgcattaacattttgatactcttatatttcttccttggagattaattat |
6247598 |
T |
|
| Q |
403 |
aaaagcaaaattcactaactttaatttattaaaattatttgttaaatacaactaattctcgatctcataannnnnnnnagacattctcaataatttattt |
502 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6247599 |
--aaccaagattcactaactttaatttattaaaattatttcttaaatacaactaattctcgatctcataa--aagaatagacattctcaataatttattt |
6247694 |
T |
|
| Q |
503 |
catgaaaacttgctttatgaaaataaaagagtcatattagaaagtaaaaattacattaaataagggatatt |
573 |
Q |
| |
|
|| ||| ||| ||||||||||||| | | ||||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
6247695 |
cacgaattcttaatttatgaaaataagaaaatcatattggaaagtaaaaattacaat-aataagggatatt |
6247764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 56 - 324
Target Start/End: Original strand, 6226040 - 6226319
Alignment:
| Q |
56 |
catgatccatcaaacataattagttcttgtt---tgtagaatcctttgtagaatcaacagctccttgagcctttgcttgcatctgctgaccagtctacac |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| | |||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6226040 |
catgatccatcaaacataattagttcttgttatttgttgaatccttgactgcatcaaccgctccttgagcctttgcttgcatctgctgaccagcctacac |
6226139 |
T |
|
| Q |
153 |
ataat-aaatnnnnnnntataagcaacatttttacattgaggccatgaatttttgctataaatctatatcataca-------annnnnnnnaactacaaa |
244 |
Q |
| |
|
||||| ||| |||||||||||||||||| || ||||||||||||| |||||||| ||||| ||||| | | ||| | ||| |
|
|
| T |
6226140 |
ataataaaaataaaagatataagcaacatttttacttttaggccatgaatttgtgctataagtctatttcatagaatgtattaattttgtaaacaaaaaa |
6226239 |
T |
|
| Q |
245 |
ttgctacctcttgcattgattctttggccgactgaacagcattgctagccttgtccatcatgttgctagccttttcctat |
324 |
Q |
| |
|
|| ||||||||||| ||||||| | || |||||| ||||||||||||| || ||| ||| ||||||||||||||||||| |
|
|
| T |
6226240 |
atgttacctcttgcaatgattctcttgcagactgagcagcattgctagctttctccgtcaagttgctagccttttcctat |
6226319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 6279398 - 6279495
Alignment:
| Q |
63 |
catcaaacataattagttcttgtttgtagaatcctttgtagaatcaacagctccttgagcctttgcttgcatctgctgaccagtctacacataataaa |
160 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||||| |||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
6279398 |
catcaaacataattagttcctgtttgttgcatcctttgcagaatcaacaactccttgagcttttgcctgcatctgctgaccagcctacacataataaa |
6279495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 6272246 - 6272353
Alignment:
| Q |
56 |
catgatccatcaaacataattagttc---ttgtttgtagaatcctttgtagaatcaacagctccttgagcctttgcttgcatctgctgaccagtctacac |
152 |
Q |
| |
|
||||||| | |||||||||||||||| |||||||| | |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6272246 |
catgatctaccaaacataattagttcctgttgtttgtggcatccttcacagaatcaacagctccttgagcctttgcctgcatctgctgaccagtctacac |
6272345 |
T |
|
| Q |
153 |
ataataaa |
160 |
Q |
| |
|
|||||||| |
|
|
| T |
6272346 |
ataataaa |
6272353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 249 - 336
Target Start/End: Original strand, 6272456 - 6272543
Alignment:
| Q |
249 |
tacctcttgcattgattctttggccgactgaacagcattgctagccttgtccatcatgttgctagccttttcctattattcacacaca |
336 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
6272456 |
tacctcttgcattgattctttggcagattgagcagcattgctagccttgtcggtcaagttgctagccttttcctattatcaacacaca |
6272543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 6263168 - 6263272
Alignment:
| Q |
56 |
catgatccatcaaacataattagttcttgtttgtagaatcctttgtagaatcaacagctccttgagcctttgcttgcatctgctgaccagtctacacata |
155 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||| | |||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |
|
|
| T |
6263168 |
catgatccatcaaacgtgattagctcttgtttgctgcatccttcacagaatcaacaactccttgtgcctttgcctgcatctgctgaccagtctacgcatg |
6263267 |
T |
|
| Q |
156 |
ataaa |
160 |
Q |
| |
|
||||| |
|
|
| T |
6263268 |
ataaa |
6263272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 500 - 572
Target Start/End: Original strand, 6263790 - 6263864
Alignment:
| Q |
500 |
tttcatgaaaacttgctttatgaaaataaaagagtcatattagaaagtaaaaa--ttacattaaataagggatat |
572 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
6263790 |
tttcatgaaaacttgttttatgaaaataaaagaggcatattggaaagtaaaaaacttacataaaataagggatat |
6263864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 6280346 - 6280421
Alignment:
| Q |
249 |
tacctcttgcattgattctttggccgactgaacagcattgctagccttgtccatcatgttgctagccttttcctat |
324 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
6280346 |
tacctcttgtgttgattctttggcagactgggcagcattgctagccttgtccatcaagttgctagctttttcctat |
6280421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 6251237 - 6251195
Alignment:
| Q |
281 |
cagcattgctagccttgtccatcatgttgctagccttttccta |
323 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
6251237 |
cagcattgctagccttatccatcatattgctagccttttccta |
6251195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 6282454 - 6282393
Alignment:
| Q |
262 |
gattctttggccgactgaacagcattgctagccttgtccatcatgttgctagccttttccta |
323 |
Q |
| |
|
|||||||| || || ||| ||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
6282454 |
gattcttttgcagattgagcagcattgctagccttgtctgtcatggtgctagccttttccta |
6282393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 6263513 - 6263596
Alignment:
| Q |
242 |
aaattgctacctcttgcattgattctttggccgactgaacagcattgctagccttgtccatcatgttgctagccttttcctatt |
325 |
Q |
| |
|
|||||| |||||||||| ||||||| |||| ||||| |||| ||||||||||| || || |||||||||||||||||||| |
|
|
| T |
6263513 |
aaattgttacctcttgcgttgattcgctggcagactgggcagcgttgctagccttatctgacaagttgctagccttttcctatt |
6263596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 47 - 561
Target Start/End: Original strand, 24469099 - 24469614
Alignment:
| Q |
47 |
tgacacagacatgatccatcaaacataattagttcttgtttgtagaatcctttgtagaatcaacagctccttgagcctttgcttgcatctgctgaccagt |
146 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
24469099 |
tgacatagacatgatccatcaaacataattagttcttgtttgtagaatccttagcagaatcaacagctccttgcgcctttgcctgcatctgctgaccaac |
24469198 |
T |
|
| Q |
147 |
ctacacataataaatnnnnnnn-tataagcaacatttttacattgaggccatgaatttttgctataaatctatatcatacaannnnnnnn---aactaca |
242 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
24469199 |
ctacacatgataaaaaatatatatataagcaacatttttacatgtaagccatgaatttttgctagaaatatatatcatacaattattttttttaactaca |
24469298 |
T |
|
| Q |
243 |
aattgctacctcttgcattgattctttggccgactgaacagcattgctagccttgtccatcatgttgctagccttttcctattattcacac--acaaaaa |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || ||||||||||||| ||||||||||| |||||||| ||||||||| ||||| | ||||| |
|
|
| T |
24469299 |
aattgctacctcttgcattgattctttggcagactgagcaacattgctagccttatccatcatgttactagccttctcctattatccacacaaaaaaaaa |
24469398 |
T |
|
| Q |
341 |
ggttattatacaaaattgagtgcattcatatttagata-aaatttttctcggagattaattataaaagcaaaattcactaactttaatttattaaaatta |
439 |
Q |
| |
|
| |||| ||||||||||||||||||| ||||||||||| | | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24469399 |
gtttatcatacaaaattgagtgcattaatatttagatatatctctttct---agattaattat--aagcaaaattcactaactttaatttattaaaatta |
24469493 |
T |
|
| Q |
440 |
tttgttaaatacaactaattctcgatctcataannnnnnnnagacattctcaataatttatttcatgaaaacttgctttatgaaaataaaagagtcatat |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||| | ||||| || ||||| ||| |||| ||||| ||||||| ||| |||||| |
|
|
| T |
24469494 |
tttgttaaatacaactaattctcgatctcat-ataaaaaatagacattttaaataaattgtttcacgaatacttaatttataaaaataagagaatcatat |
24469592 |
T |
|
| Q |
540 |
tagaaagtaaaaattacattaa |
561 |
Q |
| |
|
| ||||||||| |||||||||| |
|
|
| T |
24469593 |
tggaaagtaaacattacattaa |
24469614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University