View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_high_6 (Length: 544)

Name: NF7737_high_6
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_high_6
NF7737_high_6
[»] chr3 (2 HSPs)
chr3 (1-347)||(48101099-48101445)
chr3 (421-529)||(48100961-48101069)
[»] chr1 (2 HSPs)
chr1 (1-347)||(9933817-9934163)
chr1 (421-529)||(9933679-9933787)
[»] chr8 (2 HSPs)
chr8 (1-302)||(23582341-23582642)
chr8 (418-529)||(23582702-23582813)
[»] chr6 (1 HSPs)
chr6 (2-186)||(22208224-22208408)
[»] chr5 (2 HSPs)
chr5 (88-344)||(9991401-9991654)
chr5 (418-490)||(9991241-9991313)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 48101445 - 48101099
Alignment:
Q  1 acatcttcgcgtttttggttgtctttgttatcccctgattccatccaatatcattaacaaactgcaaccacgctcgaccccgtgtgccttcttagggtat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  48101445 acatcttcgcgtttttggttgtctttgttatcccctgtttccatccactatcattaacaaactagaaccacgctcgaccccgtgtgtcttcttagggtat 48101346  T
Q  101 cccactaatcacagaggttataaatgttttaatttgtcgcacagaaagatcatcatctcccgacatgtcatatttgatgagacacagtttccctttgccc 200  Q
    ||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  48101345 cccactaatcacagaggatacaaatgttttgatttgtcgcacagaaagatcattatctcccggcatgtcatatttgatgagacacaatttccctttgccc 48101246  T
Q  201 acatgtcttccttacctctcaccacatatgattgtttcacagatgacctacacccatctattgtccatcaatggaccaatccttccttgcaacctcttcc 300  Q
    ||||| ||||| |||||| |||| | ||||| |||||||| ||||||||||||||||||||| ||||||| ||||| || ||  ||||||||||||| ||    
T  48101245 acatgccttccctacctcccaccgcctatgactgtttcactgatgacctacacccatctattatccatcagtggacgaaccccaccttgcaacctctacc 48101146  T
Q  301 caatgaccttcgtagtctgccacctcatatacctgaccctctgtcta 347  Q
      |||||||||  ||||   |||||| |||||||||||||| |||||    
T  48101145 tcatgaccttcccagtccatcacctcctatacctgaccctccgtcta 48101099  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 421 - 529
Target Start/End: Complemental strand, 48101069 - 48100961
Alignment:
Q  421 acctccccatcacctacaccactggcccaacctgcacctcccactcggactatggccacccgtagcatgcggggtatctacaaacctagaaaactcttta 520  Q
    |||||| |||||||| | ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||    
T  48101069 acctcctcatcacctgccccactagcccagcctgcacctcccactcggactatggccactcgtagcatgcagggtatctacaaacctaaaaagctcttta 48100970  T
Q  521 acctctctg 529  Q
    |||||||||    
T  48100969 acctctctg 48100961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 9934163 - 9933817
Alignment:
Q  1 acatcttcgcgtttttggttgtctttgttatcccctgattccatccaatatcattaacaaactgcaaccacgctcgaccccgtgtgccttcttagggtat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  9934163 acatcttcgcgtttttggttgtctttgttatcccctgtttccatccactatcattaacaaactagaaccacgctcgaccccgtgtgtcttcttagggtat 9934064  T
Q  101 cccactaatcacagaggttataaatgttttaatttgtcgcacagaaagatcatcatctcccgacatgtcatatttgatgagacacagtttccctttgccc 200  Q
    ||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  9934063 cccactaatcacagaggatacaaatgttttgatttgtcgcacagaaagatcattatctcccggcatgtcatatttgatgagacacaatttccctttgccc 9933964  T
Q  201 acatgtcttccttacctctcaccacatatgattgtttcacagatgacctacacccatctattgtccatcaatggaccaatccttccttgcaacctcttcc 300  Q
    ||||| ||||| |||||| |||| | ||||| |||||||| ||||||||||||||||||||| ||||||| ||||| || ||  ||||||||||||| ||    
T  9933963 acatgccttccctacctcccaccgcctatgactgtttcactgatgacctacacccatctattatccatcagtggacgaaccccaccttgcaacctctacc 9933864  T
Q  301 caatgaccttcgtagtctgccacctcatatacctgaccctctgtcta 347  Q
      |||||||||  ||||   |||||| |||||||||||||| |||||    
T  9933863 tcatgaccttcccagtccatcacctcctatacctgaccctccgtcta 9933817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 421 - 529
Target Start/End: Complemental strand, 9933787 - 9933679
Alignment:
Q  421 acctccccatcacctacaccactggcccaacctgcacctcccactcggactatggccacccgtagcatgcggggtatctacaaacctagaaaactcttta 520  Q
    |||||| |||||||| | ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||    
T  9933787 acctcctcatcacctgccccactagcccagcctgcacctcccactcggactatggccactcgtagcatgcagggtatctacaaacctaaaaagctcttta 9933688  T
Q  521 acctctctg 529  Q
    |||||||||    
T  9933687 acctctctg 9933679  T

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Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 23582341 - 23582642
Alignment:
Q  1 acatcttcgcgtttttggttgtctttgttatcccctgattccatccaatatcattaacaaactgcaaccacgctcgaccccgtgtgccttcttagggtat 100  Q
    |||| |||| || ||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  23582341 acattttcgtgtctttggttgtgtttgttatcccctgattccatccattatcatcaacaaaccgcaaccacgctcgaccccgtgtgtcttcttagggtat 23582440  T
Q  101 cccactaatcacagaggttataaatgttttaatttgtcgcacagaaagatcatcatctcccgacatgtcatatttgatgagacacagtttccctttgccc 200  Q
    || | ||||||||||||||| ||||||||| ||||||| || |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||    
T  23582441 ccaattaatcacagaggttacaaatgttttgatttgtcccatagaaagatcatcgtttcccgacatgtcatatttgatgagacacagtttcccgttgccc 23582540  T
Q  201 acatgtcttccttacctctcaccacatatgattgtttcacagatgacctacacccatctattgtccatcaatggaccaatccttccttgcaacctcttcc 300  Q
    ||||| ||||| ||||||||| | | ||||||||||| || ||||||||||||||||||||| |||||||||||||||||||  ||||| ||||||||||    
T  23582541 acatgccttccctacctctcatctcttatgattgttttactgatgacctacacccatctattatccatcaatggaccaatcccaccttgaaacctcttcc 23582640  T
Q  301 ca 302  Q
    ||    
T  23582641 ca 23582642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 23582702 - 23582813
Alignment:
Q  418 gatacctccccatcacctacaccactggcccaacctgcacctcccactcggactatggccacccgtagcatgcggggtatctacaaacctagaaaactct 517  Q
    |||||||| ||||||||||||| | || ||||||||||||||| |||||| || |||||||||||||||||||| ||||||| |||||||||||| || |    
T  23582702 gatacctctccatcacctacacaattgccccaacctgcacctcgcactcgaacaatggccacccgtagcatgcgaggtatctgcaaacctagaaatcttt 23582801  T
Q  518 ttaacctctctg 529  Q
    ||||||| ||||    
T  23582802 ttaacctttctg 23582813  T

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Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 22208408 - 22208224
Alignment:
Q  2 catcttcgcgtttttggttgtctttgttatcccctgattccatccaatatcattaacaaactgcaaccacgctcgaccccgtgtgccttcttagggtatc 101  Q
    |||||||| || |||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||||  | || ||||||||||||||    
T  22208408 catcttcgtgtctttggttgtctttgatatcccccgcttccatccactatcattaacaaactgcaaccacgctcgaccctctatgtcttcttagggtatc 22208309  T
Q  102 ccactaatcacagaggttataaatgttttaatttgtcgcacagaaagatcatcatctcccgacatgtcatatttgatgagacaca 186  Q
    |||||||||||| ||  || ||||||||| |||||| |||||||||||||||| | |||| ||||||||||||| ||||||||||    
T  22208308 ccactaatcacaaagtctaaaaatgttttgatttgttgcacagaaagatcatcgtttcccaacatgtcatatttaatgagacaca 22208224  T

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Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 88 - 344
Target Start/End: Complemental strand, 9991654 - 9991401
Alignment:
Q  88 cttcttagggtatcccactaatcacagaggttataaatgttttaatttgtcgcacagaaagatcatcatctcccgacatgtcatatttgatgagacacag 187  Q
    |||||||||||||| || |||||||| |||| | ||||||||| ||||||||||||||||||||||||| || ||||||||||  ||| ||||||||||     
T  9991654 cttcttagggtatctcattaatcacataggtcacaaatgttttgatttgtcgcacagaaagatcatcatttcacgacatgtca-ctttcatgagacacaa 9991556  T
Q  188 tttccctttgcccacatgtcttccttacctctcaccacatatgattgtttcacagatgacctacaccca--tctattgtccatcaatggaccaatccttc 285  Q
    |||| |||||||| ||    |||| ||||| ||||| | ||||||| ||||||  ||||| | ||||||  |||||| |||||||    ||| ||||  |    
T  9991555 tttctctttgcccgcagacattccctacctttcaccgcctatgattatttcactcatgacttgcacccatctctattatccatca----acctatcccac 9991460  T
Q  286 cttgcaacctcttcccaatgaccttcgtagtctgccacctcatatacctgaccctctgt 344  Q
     ||||||||||||||||||||| ||| | |||   |||||||||||| ||||| |||||    
T  9991459 attgcaacctcttcccaatgacattcctggtccatcacctcatatacttgaccatctgt 9991401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 490
Target Start/End: Complemental strand, 9991313 - 9991241
Alignment:
Q  418 gatacctccccatcacctacaccactggcccaacctgcacctcccactcggactatggccacccgtagcatgc 490  Q
    ||||||||| |||||||||||||| ||||||||| |||||| || ||| ||| |||||||||| |||||||||    
T  9991313 gatacctcctcatcacctacaccattggcccaacttgcaccacctacttggattatggccacctgtagcatgc 9991241  T

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