View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_high_68 (Length: 205)
Name: NF7737_high_68
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_high_68 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 2851990 - 2851805
Alignment:
| Q |
1 |
acaaaataccctatgtttctatgtttcacatgccactaactattccataccattattttagattggtagacaatgaatatatatagtttccatacaaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2851990 |
acaaaataccctatgtttctatgtttcacatgccactaactattccataccattattttagattggtagactatgaatatatatagtttccatacaaata |
2851891 |
T |
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| Q |
101 |
taatttacttgatgacaatgaagttctccgtgttaatctaactatttcccataactaacctaatctaactattgcccataactatc |
186 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2851890 |
taatttacttggtgacaatgaagttctccgtgttaatctaactatttcccataactaacctaatctaactattgcccataactatc |
2851805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 2904022 - 2903837
Alignment:
| Q |
1 |
acaaaataccctatgtttctatgtttcacatgccactaactattccataccattattttagattggtagacaatgaatatatatagtttccatacaaata |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2904022 |
acaaaataccctatgtttctatgtttcacatgccactaactattccataccattattttagattggtagactatgaatatatatagtttccatacaaata |
2903923 |
T |
|
| Q |
101 |
taatttacttgatgacaatgaagttctccgtgttaatctaactatttcccataactaacctaatctaactattgcccataactatc |
186 |
Q |
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| T |
2903922 |
taatttacttggtgacaatgaagttctccgtgttaatctaactatttcccataactaacctaatctaactattgcccataactatc |
2903837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 42950234 - 42950098
Alignment:
| Q |
22 |
tgtttcacatgccactaactattccataccattattttagattggtagacaatgaatatata--tagtttccatacaaatataatttacttgatgacaat |
119 |
Q |
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||||||||||| |||||||||| |||||||||||||| | |||| |||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
42950234 |
tgtttcacatgtcactaactataccataccattatttaa-attgatagattatgaatatatagatagtttccatacaaatataatttacttggtgacaat |
42950136 |
T |
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| Q |
120 |
gaagttctccgtgttaatctaactatttcccataacta |
157 |
Q |
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|||||| ||| |||||||||||||||| |||||||||| |
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| T |
42950135 |
gaagttttccatgttaatctaactattgcccataacta |
42950098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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