View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7737_low_10 (Length: 533)
Name: NF7737_low_10
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 124 - 523
Target Start/End: Complemental strand, 54860097 - 54859696
Alignment:
| Q |
124 |
tgaaatccaaacaagcatacacacatttaaatcatgcatcaatactagtactgtataagcagaacaagggagaataggtttaaaagcatgcatcaaataa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54860097 |
tgaaatccaaacaagcatacacacatttaaatcatgcatcaatactagtactgtataagcagaacaagggagaataggtttaaaagcatgcatcaaataa |
54859998 |
T |
|
| Q |
224 |
caattctgagagaagcaatgcgccagagcga----aacaaagcaaaacaagaaatcactaagaatagaagagtagcccaagttaattggaagaatttaca |
319 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54859997 |
caattc-gagagaagcaatgcgccagagcgagcgaaacaaagcaaaacaagaaatcactaagaatagaagagtagcccaagttaattggaagaatttaca |
54859899 |
T |
|
| Q |
320 |
ctaggaaaaattatgctcatatggttaatgccgacttaaaatatataattgttttcttttcatagaaccagacagacgtacgagagtccagaaaaccaaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54859898 |
ctaggaaaaattatgctcatatggttaatgccgacttaaa----ataattgttttcttttcatagaaccagacagacgtacgagagtccagaaaaccaaa |
54859803 |
T |
|
| Q |
420 |
catata---cnnnnnnncagagtacaagataaatataaagtacaggtaatgttaaaattaccaatcagtgcagtgatcacactggaccataacttcatca |
516 |
Q |
| |
|
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54859802 |
aatacaaagcaaaaaaacagagtacaagataaatataaagtacaggtaatgttaaaattaccaatcagtgcagtgatcacactggaccataacttcatca |
54859703 |
T |
|
| Q |
517 |
gtattat |
523 |
Q |
| |
|
| ||||| |
|
|
| T |
54859702 |
ggattat |
54859696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 54863738 - 54863659
Alignment:
| Q |
19 |
taactagaagtattattgtctttagctttcctatatcacatgtcatgaacaattacatgtataatcaaaagaaacataat |
98 |
Q |
| |
|
|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
54863738 |
taactagaagtacaatattctttagctttcctaaatcacatgtcatgaacaattacatgtatagtcgaaagaaacataat |
54863659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 54860138 - 54860094
Alignment:
| Q |
23 |
tagaagtattattgtctttagctttcctatatcacatgtcatgaa |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54860138 |
tagaagtattattgtctttagctttcctatatcacatgtcatgaa |
54860094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 54855353 - 54855155
Alignment:
| Q |
19 |
taactagaagtattattgtctttagctttcctatatcacat-----gtcatgaacaattacatgtataatcaaaagaaacataatagtcttgagttgcaa |
113 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||||| || | |||||| ||| ||| |||||||||||||||||||||| ||| || | ||| |
|
|
| T |
54855353 |
taactagaattattatcgtctttagcttacctatatcatatcatatgccatgaaaaataacaagtataatcaaaagaaacataattctctggatatacaa |
54855254 |
T |
|
| Q |
114 |
tccagaagtctgaaatccaaacaagcatacacacatttaaatc--------atgcatcaatactagtactgtataagcagaacaagggagaataggttt |
204 |
Q |
| |
|
|| | | ||| |||||||||||||||||||||||||||| | |||||| |||| |||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
54855253 |
tctaaatgtccataatccaaacaagcatacacacatttaaagcacgaatctatgcatgaataaaagtattgtataagaagaacaagggagagtaggttt |
54855155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University