View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_11 (Length: 519)
Name: NF7737_low_11
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 32312634 - 32312324
Alignment:
| Q |
19 |
agaatgctatatatgtgagtgaaatgatatatttttgttgtcgttgtcattagtggttgtgttttcagctttgtgtttgatgataatttttctgaataaa |
118 |
Q |
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| T |
32312634 |
agaatgctatatatgtga----aatgatatatttttgtggtcgttttcattagtggttgtgttttcagctttgtgtttgatgataatttttctgaataaa |
32312539 |
T |
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| Q |
119 |
taattaaacttaaaccgcaatcaaagtgaaaagtataaacggttggggttcaatgttgacgtgggaaattgtatgattgtgattaatttttagagtttaa |
218 |
Q |
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| T |
32312538 |
taaataaacttaaaccgcaatcaaagtgaaaggtataaacggttggggttcaatgttgacgtgggaaattgtatgattgtgattaatttttagagtttaa |
32312439 |
T |
|
| Q |
219 |
tcaatatatt-ttttcagtgtataaatattttacacatgtatttaataatatgttattgcgttaattaatgataatgataatttatgtatttttctattc |
317 |
Q |
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| T |
32312438 |
ttaatatatttttttcggtgtacaaatattttacacatgtatttaataatgtgttattgcattaattaatgaatatgataatttatgtatttttcaattc |
32312339 |
T |
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| Q |
318 |
aataattgacgttac |
332 |
Q |
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| T |
32312338 |
aataattgacgttac |
32312324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 395 - 519
Target Start/End: Complemental strand, 32312261 - 32312136
Alignment:
| Q |
395 |
tttctattatcatacaaaaaaggttttgcatttgcatattaagtaaagnnnnnnnttaggtggacaccnnnnnnn-tattatgagtgtgatcggttgatt |
493 |
Q |
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| T |
32312261 |
tttctgttataataaaaaaaaggttttgcatttgcatattaagtaaagaaaaaaattaggtggacaccaaaaaaaatattatgagtgtgatcggttgatg |
32312162 |
T |
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| Q |
494 |
acctgataaatatagagatataaaaa |
519 |
Q |
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| T |
32312161 |
acctgataaatatagagatataaaaa |
32312136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 50735559 - 50735614
Alignment:
| Q |
211 |
gagtttaatcaatatattttttcagtgtataaatattttacacatgtatttaataa |
266 |
Q |
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| T |
50735559 |
gagtttaattaatatattatatcagtgtataattattttacacatatatttaataa |
50735614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 50777296 - 50777241
Alignment:
| Q |
211 |
gagtttaatcaatatattttttcagtgtataaatattttacacatgtatttaataa |
266 |
Q |
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| T |
50777296 |
gagtttaattaatatattatatcagtgtataattattttacacatatatttaataa |
50777241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 6834449 - 6834402
Alignment:
| Q |
212 |
agtttaatcaatatattttttcagtgtataaatattttacacatgtat |
259 |
Q |
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| T |
6834449 |
agtttaattaatatgttttgtcagtgtataattattttacacatgtat |
6834402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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