View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_low_14 (Length: 497)

Name: NF7737_low_14
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_low_14
NF7737_low_14
[»] chr6 (15 HSPs)
chr6 (10-181)||(27108101-27108273)
chr6 (10-181)||(27149898-27150070)
chr6 (10-205)||(1757421-1757618)
chr6 (18-180)||(1692916-1693079)
chr6 (10-180)||(14174121-14174292)
chr6 (10-180)||(14178657-14178828)
chr6 (11-181)||(27107198-27107369)
chr6 (11-181)||(27149004-27149175)
chr6 (5-181)||(11724218-11724395)
chr6 (10-181)||(1692091-1692262)
chr6 (78-149)||(10673658-10673730)
chr6 (78-149)||(25437832-25437903)
chr6 (78-157)||(24317090-24317170)
chr6 (214-247)||(6535310-6535343)
chr6 (78-149)||(25439102-25439174)
[»] chr3 (31 HSPs)
chr3 (10-181)||(45730654-45730826)
chr3 (10-179)||(33000727-33000897)
chr3 (10-181)||(39531743-39531915)
chr3 (5-181)||(39530812-39530989)
chr3 (10-181)||(4067943-4068115)
chr3 (10-181)||(53901586-53901758)
chr3 (10-181)||(50765701-50765873)
chr3 (11-181)||(2088859-2089030)
chr3 (10-179)||(1032790-1032960)
chr3 (71-181)||(50150738-50150848)
chr3 (11-181)||(32999814-32999985)
chr3 (10-180)||(46688425-46688595)
chr3 (72-202)||(46690284-46690415)
chr3 (5-153)||(53902558-53902706)
chr3 (205-249)||(10670860-10670904)
chr3 (78-149)||(27225482-27225554)
chr3 (78-141)||(27226534-27226598)
chr3 (11-121)||(50002491-50002602)
chr3 (212-249)||(10669943-10669980)
chr3 (10-50)||(4068907-4068947)
chr3 (78-149)||(5384470-5384542)
chr3 (5-48)||(1031936-1031979)
chr3 (78-148)||(50003218-50003289)
chr3 (127-181)||(1031833-1031887)
chr3 (214-247)||(12008931-12008964)
chr3 (10-55)||(46690220-46690265)
chr3 (205-242)||(52743671-52743708)
chr3 (11-56)||(55387573-55387618)
chr3 (205-249)||(4297055-4297099)
chr3 (205-245)||(21218636-21218676)
chr3 (212-252)||(32568224-32568264)
[»] chr8 (19 HSPs)
chr8 (10-181)||(22914117-22914289)
chr8 (10-202)||(16346094-16346288)
chr8 (10-181)||(9190369-9190541)
chr8 (10-167)||(23767908-23768066)
chr8 (11-181)||(4534051-4534222)
chr8 (10-181)||(4534956-4535127)
chr8 (11-181)||(22913209-22913380)
chr8 (5-201)||(9189390-9189588)
chr8 (10-178)||(12820025-12820194)
chr8 (10-181)||(12818771-12818943)
chr8 (72-181)||(23768475-23768584)
chr8 (212-249)||(9404156-9404193)
chr8 (212-249)||(9406317-9406354)
chr8 (213-249)||(9369094-9369130)
chr8 (205-249)||(9406851-9406895)
chr8 (211-243)||(9370115-9370147)
chr8 (127-181)||(2421338-2421392)
chr8 (127-184)||(39220693-39220750)
chr8 (11-55)||(23768413-23768457)
[»] chr7 (16 HSPs)
chr7 (10-204)||(29344157-29344353)
chr7 (12-185)||(47927392-47927566)
chr7 (10-188)||(47928357-47928536)
chr7 (5-181)||(40881108-40881285)
chr7 (71-181)||(47537029-47537139)
chr7 (26-181)||(33071581-33071737)
chr7 (71-144)||(37783636-37783709)
chr7 (71-181)||(37781974-37782084)
chr7 (21-149)||(33070654-33070783)
chr7 (78-148)||(47535709-47535780)
chr7 (71-180)||(29345068-29345176)
chr7 (78-148)||(23153625-23153696)
chr7 (139-202)||(4167446-4167510)
chr7 (211-243)||(47817426-47817458)
chr7 (214-249)||(47818446-47818481)
chr7 (205-245)||(39255689-39255729)
[»] scaffold0009 (2 HSPs)
scaffold0009 (10-203)||(205479-205674)
scaffold0009 (11-181)||(204553-204726)
[»] chr2 (12 HSPs)
chr2 (10-178)||(20630598-20630767)
chr2 (10-181)||(30179479-30179651)
chr2 (18-181)||(33553300-33553464)
chr2 (10-184)||(39272137-39272312)
chr2 (73-181)||(30178562-30178670)
chr2 (78-199)||(371962-372083)
chr2 (205-252)||(11873275-11873322)
chr2 (203-252)||(9033996-9034045)
chr2 (215-255)||(11875761-11875801)
chr2 (211-249)||(9034770-9034808)
chr2 (127-202)||(25570915-25570991)
chr2 (11-55)||(30178689-30178733)
[»] chr1 (12 HSPs)
chr1 (11-181)||(21246403-21246574)
chr1 (11-180)||(43807453-43807623)
chr1 (5-202)||(43808443-43808642)
chr1 (5-180)||(30743105-30743281)
chr1 (261-341)||(39937611-39937691)
chr1 (368-468)||(39937392-39937491)
chr1 (10-149)||(9822700-9822840)
chr1 (205-249)||(6815255-6815299)
chr1 (204-249)||(1670199-1670244)
chr1 (212-249)||(28700024-28700061)
chr1 (139-204)||(26801936-26802002)
chr1 (127-181)||(22167796-22167850)
[»] chr4 (32 HSPs)
chr4 (10-185)||(43708849-43709026)
chr4 (5-203)||(43709796-43709995)
chr4 (7-181)||(47242969-47243144)
chr4 (10-181)||(47572603-47572775)
chr4 (10-203)||(26059712-26059905)
chr4 (10-202)||(50496990-50497184)
chr4 (21-181)||(47243928-47244089)
chr4 (71-181)||(26045149-26045259)
chr4 (21-181)||(47573582-47573743)
chr4 (11-181)||(5417321-5417492)
chr4 (10-123)||(5418156-5418270)
chr4 (5-177)||(50497894-50498067)
chr4 (71-204)||(11482789-11482924)
chr4 (5-57)||(48413485-48413537)
chr4 (78-148)||(21569300-21569371)
chr4 (78-148)||(21570418-21570489)
chr4 (103-181)||(48413572-48413650)
chr4 (78-149)||(42698656-42698728)
chr4 (205-249)||(42859741-42859785)
chr4 (214-249)||(23668227-23668262)
chr4 (212-249)||(42860663-42860700)
chr4 (211-243)||(23669259-23669291)
chr4 (82-149)||(44217622-44217690)
chr4 (10-60)||(11484477-11484527)
chr4 (127-185)||(17319055-17319113)
chr4 (142-203)||(34438400-34438462)
chr4 (214-247)||(11883025-11883058)
chr4 (214-247)||(33018673-33018706)
chr4 (127-180)||(44159103-44159156)
chr4 (211-255)||(51751441-51751486)
chr4 (211-247)||(35347304-35347340)
chr4 (205-249)||(53648963-53649006)
[»] chr5 (19 HSPs)
chr5 (10-202)||(24071370-24071563)
chr5 (10-181)||(39134684-39134856)
chr5 (11-181)||(11907089-11907260)
chr5 (11-180)||(39135576-39135746)
chr5 (21-181)||(4904221-4904381)
chr5 (28-175)||(23679170-23679318)
chr5 (28-175)||(23855494-23855642)
chr5 (84-181)||(24070422-24070519)
chr5 (78-148)||(42963210-42963281)
chr5 (109-181)||(8284271-8284343)
chr5 (5-51)||(24070583-24070629)
chr5 (78-121)||(42962101-42962144)
chr5 (139-204)||(12862975-12863041)
chr5 (126-181)||(11906372-11906427)
chr5 (139-181)||(8188257-8188299)
chr5 (139-204)||(12830995-12831061)
chr5 (127-200)||(8187164-8187236)
chr5 (78-149)||(38603745-38603817)
chr5 (214-246)||(43070219-43070251)
[»] scaffold0041 (1 HSPs)
scaffold0041 (5-181)||(84998-85175)
[»] scaffold0098 (1 HSPs)
scaffold0098 (140-202)||(42404-42466)
[»] scaffold0427 (1 HSPs)
scaffold0427 (205-249)||(6868-6912)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 27108101 - 27108273
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||||||||||    
T  27108101 ggtgttggtgatacacggttagatatgatgaacttcctttatccaacgatcttcttttttatggatttcaaattaataaaataggactaaatcgatgatg 27108200  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||  ||||||| ||||||||||||||||||    
T  27108201 aaaacaaagataaggtccaaattaaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaag 27108273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 27149898 - 27150070
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||||||||||    
T  27149898 ggtgttggtgatacacggttagatatgatgaacttcctttatccaacgatcttcttttttatggatttcaaattaataaaataggactaaatcgatgatg 27149997  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||  ||||||| ||||||||||||||||||    
T  27149998 aaaacaaagataaggtccaaattaaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaag 27150070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 1757421 - 1757618
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||| ||         | |||||| |||||||||||||||||| ||||||| || |    
T  1757421 ggtgttggtgatacacggttagatatgatgaacttactttatccaacggtcttctttttgagggatttaaaattaataaaataggaccaaatcgacgacg 1757520  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagaga-cggaagatgcattaagccaag 205  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||  ||||||| |||||||||||||||||| || |||| |||| |||||||||||    
T  1757521 aaaacaaagataaggaccaaattgaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaagggaccggaggatgtattaagccaag 1757618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 1692916 - 1693079
Alignment:
Q  18 tgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatgaaaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||| |||| ||         | |||||||||||||||||||| |||| |||||||||| |||||||||    
T  1692916 tgatacacggttagatatgatgaacttcctttatctaacggtcttcttttttatggatttcaaattaataaaattggaccaaatcgatgacgaaaacaaa 1693015  T
Q  117 gataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaa 180  Q
    ||||||| | ||||| ||| ||||||||||||| |||  |||||||||||||||||||||||||    
T  1693016 gataaggaccaaattaaaatgtttaatagttaagggaccaaactgaaaaattaaaataagttaa 1693079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 14174292 - 14174121
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacg-gatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  ||        | | ||||| |||||||||||||||||| |||||||||| |    
T  14174292 ggtgttggtgatacacggttagatatgatgaacttcctttatccaactgtcttctttttaagagatttaaaattaataaaataggacaaaatcgatgacg 14174193  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaa 180  Q
    |||||||||||||||   ||||||||| |||||||||||| ||||  ||||||| |||||||||||||||||    
T  14174192 aaaacaaagataaggatcaaattgaaaagtttaatagttagtggaccaaactgagaaattaaaataagttaa 14174121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 14178828 - 14178657
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacg-gatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  ||        | | ||||| |||||||||||||||||| |||||||||| |    
T  14178828 ggtgttggtgatacacggttagatatgatgaacttcctttatccaactgtcttctttttaagagatttaaaattaataaaataggacaaaatcgatgacg 14178729  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaa 180  Q
    |||||||||||||||   ||||||||| |||||||||||| ||||  ||||||| |||||||||||||||||    
T  14178728 aaaacaaagataaggatcaaattgaaaagtttaatagttagtggaccaaactgagaaattaaaataagttaa 14178657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 27107369 - 27107198
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| ||||||||||| |||||||||||||||| ||||||||| | ||         | |||||| |||||||||||||||||| |||| ||||| ||    
T  27107369 gtgttggtgatacacggtaagatatgatgaacttcttttatccaatggtctacatttttatggatttaaaattaataaaataggaccaaattgatgacga 27107270  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||||||||||||| | |||||||||  ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  27107269 aaacaaagataaggaccaaattgaaatatttaatagttaattgatcaaactgagaaattaaaataagttaag 27107198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 27149175 - 27149004
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| ||||||||||| |||||||||||||||| ||||||||| | ||         | |||||| |||||||||||||||||| |||| ||||| ||    
T  27149175 gtgttggtgatacacggtaagatatgatgaacttcttttatccaatggtctacatttttatggatttaaaattaataaaataggaccaaattgatgacga 27149076  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||||||||||||| | |||||||||  ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  27149075 aaacaaagataaggaccaaattgaaatatttaatagttaattgatcaaactgagaaattaaaataagttaag 27149004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 11724218 - 11724395
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcga 103  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||         | |||||| |||| ||||||||| ||  |||| ||    
T  11724218 agttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaatcaataaaatatgatcaaattga 11724317  T
Q  104 tgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||| |||||||||||||||| | |||||||||||||||||||||||  ||  | || |||||||||||||||||||||    
T  11724318 tgacgaaaacaaagataaggaccaaattgaaacgtttaatagttaagtgaccacaccgaaaaattaaaataagttaag 11724395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 1692262 - 1692091
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||| | ||         | |||||| ||||||||||| |||||| |||| ||||| |    
T  1692262 ggtgttggtgatacacggtaagatatgatgaacttcccttatccaatggtctacttttttagggatttaaaattaataaa-taggaccaaattgatgacg 1692164  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||| | | |||||||||| ||||||||||||  ||  |||||||||||||||||||| |||||    
T  1692163 aaaacaaagataaagactaaattgaaacatttaatagttaagagaccaaactgaaaaattaaaataaattaag 1692091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 10673730 - 10673658
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagttaa 149  Q
    ||||||||||||||||||||||| ||||| ||||||||| || |||| | ||||||||||||||| |||||||    
T  10673730 aaattaataaaataggactaaattgatgacgaaaacaaacataaaggaccaaattgaaacgtttattagttaa 10673658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 25437903 - 25437832
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaa 149  Q
    |||||||||||||||||  | || ||||  |||||||||||||| | | |||||||||||||||||||||||    
T  25437903 aaattaataaaataggatcagattgatggcgaaaacaaagataaagaccaaattgaaacgtttaatagttaa 25437832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 24317170 - 24317090
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagataag-gtcaaaattgaaacgtttaatagttaatggattaa 157  Q
    ||||| |||||| ||||  |||||||||  ||||||||||||||  | | ||||||||||||||||||||||| |||||||    
T  24317170 aaattgataaaacaggatcaaatcgatggcgaaaacaaagataaatgaccaaattgaaacgtttaatagttaaaggattaa 24317090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 6535343 - 6535310
Alignment:
Q  214 tagggtgggagaccttaataggtctcctaccgtg 247  Q
    |||||||||||||||| |||||||||||||||||    
T  6535343 tagggtgggagacctttataggtctcctaccgtg 6535310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 25439102 - 25439174
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagttaa 149  Q
    ||||||||||||| |||| |||| ||| |||||||||||||| || | | |||||||||||||| ||| ||||    
T  25439102 aaattaataaaattggaccaaattgataatgaaaacaaagataaaagaccaaattgaaacgttttataattaa 25439174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 45730826 - 45730654
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||         | ||||||||||||||||||||||||||||||||||||||    
T  45730826 ggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggactaaatcgatgatg 45730727  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||  ||||||| ||||||||||||||||||    
T  45730726 aaaacaaagataaggtccaaattgaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaag 45730654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 33000727 - 33000897
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnac-ggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||| ||           ||||||||||||||||||||||||||||||||||||      
T  33000727 ggtgttggtgatacacggttagatatgatgtacttcctttatccaacggtcttcttttttttggatttcaaattaataaaataggactaaatcgatgacc 33000826  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagtta 179  Q
    ||||||||| ||||| | ||||||||||||||||||||||| |||| ||||||| ||||||||||||||||    
T  33000827 aaaacaaaggtaaggaccaaattgaaacgtttaatagttaagggatcaaactgagaaattaaaataagtta 33000897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 39531743 - 39531915
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||| ||         | |||||| ||||||||||||| |||| |||||||| | |    
T  39531743 ggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgataacg 39531842  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||| | |||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||    
T  39531843 aaaacaaagataaggaccaaattgaaacatttcatagttaagggattaaactgagaaattaaaataagttaag 39531915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 39530989 - 39530812
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnac-ggatttcaaattaataaaataggactaaatcga 103  Q
    |||| ||||||| ||  ||||||||||||||||||||||| |||||||||||| ||        |  ||| || |||||||||||||| ||| |||||||    
T  39530989 agttaggtgttggtggcacacggttagatatgatgaactttctttatccaacggtcttctttttaaaggaattaaaattaataaaatatgaccaaatcga 39530890  T
Q  104 tgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||| ||||||||||||||||   ||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||    
T  39530889 tgacgaaaacaaagataaggatcaaattgaaacgtttaatagttaagggatcacactgagaaattaaaataagttaag 39530812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 4068115 - 4067943
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||| ||         | |||| | ||||||||||||| |||  |||||||||  |    
T  4068115 ggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttgttttttagggatctaaaattaataaaattggatcaaatcgatgtag 4068016  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||| ||||||||| | ||||| |||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  4068015 aaaactaagataaggaccaaattaaaacatttaatagttaagggattaaactgataaattaaaataagttaag 4067943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 53901758 - 53901586
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| || |||||||||| |||||||||||||||||||||||||| ||         | |||||| ||||||||||||  |||| |||||||||| |    
T  53901758 ggtgttggtggtacacggttatatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaagtggaccaaatcgatgacg 53901659  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||| | | ||||| |||| |||||||||||| ||| |||||||| |||||||||||| |||||    
T  53901658 aaaacaaagataaagaccaaattaaaacatttaatagttaagggactaaactgagaaattaaaataaattaag 53901586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 50765701 - 50765873
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacg-gatttcaaattaataaaataggactaaatcgatgatg 108  Q
    |||||||| |||||||||||||||||||||||  |||||||||||| | ||          | ||||| ||||||||||||||| |  ||||||||||      
T  50765701 ggtgttgaggatacacggttagatatgatgaatctcctttatccaatggtcttctttttgagagatttaaaattaataaaatagaatcaaatcgatgacc 50765800  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||| | |||||||||||||||||||||||  ||| ||||||| |||||||||||| |||||    
T  50765801 aaaacaaagataaggaccaaattgaaacgtttaatagttaaaagatcaaactgagaaattaaaataaattaag 50765873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 2089030 - 2088859
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| ||||||||||| ||||||||||||||||||||||  || | ||         | |||||| |||||||||||||||||| |||| ||||||||    
T  2089030 gtgttggtgatacacggtaagatatgatgaacttcctttatttaatggtctacttttttagggatttaaaattaataaaataggaccaaattgatgatga 2088931  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||||||||||||| | |||||||||| ||||||| |||| |||   |||||| |||||||||||| |||||    
T  2088930 aaacaaagataaggaccaaattgaaacatttaataattaagggacctaactgagaaattaaaataaattaag 2088859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 1032790 - 1032960
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| || |||| | ||||||||||||| |||||||||||||||||||         | |||||| ||||||||||||| | ||||||||||||| |    
T  1032790 ggtgttggtggtacatgattagatatgatgatcttcctttatccaacgatcttctttttcagggatttaaaattaataaaattgaactaaatcgatgacg 1032889  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagtta 179  Q
    |||| ||||| ||||   ||||| |||  |||||||||||| ||| |||||||||||||||||||||||||    
T  1032890 aaaataaagagaaggattaaattaaaatatttaatagttaaaggactaaactgaaaaattaaaataagtta 1032960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 50150848 - 50150738
Alignment:
Q  71 ggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaa 170  Q
    |||||| |||||||||||||||||| |||| ||||| ||||||||||| |||| | |||||||||| ||||||||||||  ||  ||||||| |||||||    
T  50150848 ggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagacaaggaccaaattgaaacatttaatagttaagtgaccaaactgagaaattaa 50150749  T
Q  171 aataagttaag 181  Q
    |||||||||||    
T  50150748 aataagttaag 50150738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 32999985 - 32999814
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||   ||         | |||||| |||||||||||||||||| |||| ||||| ||    
T  32999985 gtgttggtgatacacggtaagatatgatgaacttcccttatccaattgtctacttttatagggatttaaaattaataaaataggaccaaattgatgacga 32999886  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||||||||||||    ||||| |||| |||||||||||| |||  ||||||| ||||||||||||||||||    
T  32999885 aaacaaagataagaatcaaattaaaacatttaatagttaagggaccaaactgagaaattaaaataagttaag 32999814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 46688595 - 46688425
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    ||||||| |||||||| |||||||||||||||| | ||||||||| || ||          |||||| |||||||||||||| ||| ||||||||||  |    
T  46688595 ggtgttggtgatacacagttagatatgatgaacctgctttatccagcggtcttcttttttaggatttaaaattaataaaatatgaccaaatcgatgaaaa 46688496  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaa 180  Q
    |||||||||||||  | ||||| |||| ||||||| |||  |||| ||| ||| |||||||||||||||||    
T  46688495 aaacaaagataagaaccaaattaaaacatttaataattacaggatcaaattgagaaattaaaataagttaa 46688425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 46690284 - 46690415
Alignment:
Q  72 gatttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaa 171  Q
    ||||| ||||||||||||||| || ||||||||||  |||| | |||||| |   ||||| ||||||||||||||||| ||||||| |||  ||||||||    
T  46690284 gatttaaaattaataaaatagaaccaaatcgatgacaaaaatatagataaagatcaaattaaaacgtttaatagttaagggattaagctgggaaattaaa 46690383  T
Q  172 ataagttaagaga-cggaagatgcattaagcc 202  Q
    |||||||||| || |||| |||| ||||||||    
T  46690384 ataagttaagggaccggaggatgtattaagcc 46690415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 53902558 - 53902706
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatc-nnnnnnnnacggatttcaaattaataaaataggactaaatcga 103  Q
    |||| ||||||| ||  |||||||||||||||||||||||||||||||||||| ||         | |||||| |||||||||||||| |||  ||||||    
T  53902558 agttaggtgttggtggaacacggttagatatgatgaacttcctttatccaacggtcttcgtttttagggatttaaaattaataaaatatgacctaatcga 53902657  T
Q  104 tgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatgga 153  Q
    ||| ||||||||| |||||| | ||||| |||  ||||||||||||||||    
T  53902658 tgacgaaaacaaa-ataaggactaaattaaaagatttaatagttaatgga 53902706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 10670904 - 10670860
Alignment:
Q  205 ggctcagtctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||    
T  10670904 ggctcggtctagtgtgggagaccttaataggtctcctaccgtgag 10670860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 27225554 - 27225482
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagttaa 149  Q
    ||||||||||||||||||||||| ||||| ||||||||| || |||  | ||||||||||||||| |||||||    
T  27225554 aaattaataaaataggactaaattgatgacgaaaacaaacataaagaaccaaattgaaacgtttattagttaa 27225482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 27226534 - 27226598
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgttta 141  Q
    |||||||||||||||||| |||| ||||||||||||||| || |||| | |||||||||||||||    
T  27226534 aaattaataaaataggaccaaattgatgatgaaaacaaacataaaggaccaaattgaaacgttta 27226598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 50002602 - 50002491
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacgga-tttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| |||||||| ||||||| ||||| |  |||||||||||||||||        | ||| ||| ||||||||||||||||||||||| |||||| |    
T  50002602 gtgttggtgatacaccgttagatctgatggatctcctttatccaacgatcttcttttgaaggagtttaaaattaataaaataggactaaattgatgatta 50002503  T
Q  110 aaacaaagataa 121  Q
    ||||||| ||||    
T  50002502 aaacaaacataa 50002491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 10669943 - 10669980
Alignment:
Q  212 tctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10669943 tctagggtgggagactttaataggtctcctaccgtgag 10669980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 4068907 - 4068947
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttccttta 50  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  4068907 ggtgttggtggtacacggttagatatgatgaacttccttta 4068947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 5384542 - 5384470
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagata-aggtcaaaattgaaacgtttaatagttaa 149  Q
    ||||||||||||| |||| |||| |||| |||||||||||||| ||| | |||||||||||||| ||| ||||    
T  5384542 aaattaataaaattggaccaaattgatgttgaaaacaaagatagaggaccaaattgaaacgttttataattaa 5384470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 1031979 - 1031936
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctt 48  Q
    |||||||||||| || | ||||||||||||||||||||||||||    
T  1031979 agtttggtgttggtggtgcacggttagatatgatgaacttcctt 1031936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 50003218 - 50003289
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagtta 148  Q
    |||||||||||||||||| |||| |||||| |||||||| || |||| | |  |||||||||||||||||||    
T  50003218 aaattaataaaataggaccaaattgatgattaaaacaaacataaaggaccattttgaaacgtttaatagtta 50003289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 1031887 - 1031833
Alignment:
Q  127 aaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||||||||| |||||||||||| |||  | ||||| ||||||||||||||||||    
T  1031887 aaattgaaacatttaatagttaagggaccacactgagaaattaaaataagttaag 1031833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 12008931 - 12008964
Alignment:
Q  214 tagggtgggagaccttaataggtctcctaccgtg 247  Q
    |||||||||||||||| |||||||||||||||||    
T  12008931 tagggtgggagacctttataggtctcctaccgtg 12008964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 46690220 - 46690265
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaa 55  Q
    ||||||| ||||||||||||||||||| | ||| ||||||||||||    
T  46690220 ggtgttggtgatacacggttagatatggtaaacctcctttatccaa 46690265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 52743671 - 52743708
Alignment:
Q  205 ggctcagtctagggtgggagaccttaataggtctccta 242  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  52743671 ggctctgtctagggtgagagaccttaataggtctccta 52743708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 55387573 - 55387618
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaac 56  Q
    ||||||||||||||| |||||||  ||||||| |||||||||||||    
T  55387573 gtgttgatgatacactgttagatcggatgaacctcctttatccaac 55387618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 4297099 - 4297055
Alignment:
Q  205 ggctcagtctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    |||||||||||||||||||||  || |||||||||| ||||||||    
T  4297099 ggctcagtctagggtgggagagtttgataggtctcccaccgtgag 4297055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 21218636 - 21218676
Alignment:
Q  205 ggctcagtctagggtgggagaccttaataggtctcctaccg 245  Q
    ||||| |||||||||| ||||||||||||| ||||||||||    
T  21218636 ggctctgtctagggtgagagaccttaatagatctcctaccg 21218676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 32568264 - 32568224
Alignment:
Q  212 tctagggtgggagaccttaataggtctcctaccgtgagaga 252  Q
    |||||||||||||| |||||||||||||| || ||||||||    
T  32568264 tctagggtgggagagcttaataggtctcccactgtgagaga 32568224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 22914117 - 22914289
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||         | ||||||||||||||||||||||||| |||||||||| |    
T  22914117 ggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaatcgatgacg 22914216  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    | |||||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22914217 ataacaaagataaggatcaaattgaaacgtttaatagttaatggatcaaactgaaaaattaaaataagttaag 22914289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 16346288 - 16346094
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||         | ||||||||||||||||||||||||| |||||||||| |    
T  16346288 ggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaatcgatgacg 16346189  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagacgga-agatgcattaagcc 202  Q
    | ||||||||||||| | ||||||||||||||||||||||| |||  ||||||| |||||||||||||||||| ||| || ||||| ||||||||    
T  16346188 ataacaaagataaggaccaaattgaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaagggactgagagatgtattaagcc 16346094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 9190369 - 9190541
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||| ||         | |||||| ||||||||||||| |||| ||||||||||      
T  9190369 ggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgatgact 9190468  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||| | |||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||    
T  9190469 aaaacaaagataaggaccaaattgaaacatttaatagttaagggactaaactgagaaattaaaataagttaag 9190541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 23768066 - 23767908
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || ||||         | ||||||||||||||||||||| ||| |||||||||| |    
T  23768066 ggtgttggtgatacacggttagatatgatgaacttcctttatctaatgatcatcttttttatggatttcaaattaataaaatatgaccaaatcgatgacg 23767967  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaat 167  Q
    ||||||||||||||| | ||||||||||||||| ||||||| ||| |||||||| ||||    
T  23767966 aaaacaaagataaggactaaattgaaacgtttattagttaagggactaaactgagaaat 23767908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 4534222 - 4534051
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| | ||         | |||||| |||||||||||||||||| |||| ||||| ||    
T  4534222 gtgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctacttttttagggatttaaaattaataaaataggaccaaattgatgacga 4534123  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||||||||||||| | |||||||||| ||||||| |||| |||  ||||||| ||||||||||||||||||    
T  4534122 aaacaaagataaggaccaaattgaaacatttaatatttaaaggaccaaactgagaaattaaaataagttaag 4534051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 4534956 - 4535127
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||         | ||||||||||||||||||||||||  |||| ||||| |    
T  4534956 ggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggatcaaattgatgacg 4535055  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||| | ||||||||||||||||||  |||  ||  ||||||| |||||||||||| |||||    
T  4535056 aaaacaaagataaggaccaaattgaaacgtttaata-ataagtgaccaaactgagaaattaaaataaattaag 4535127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 22913380 - 22913209
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||||||||| ||||| ||||||||| |||||||||||||||| ||||         | |||||| |||||||||||||||||| |||| ||||| ||    
T  22913380 gtgttgatgatatacggtaagatatgataaacttcctttatccaatgatctacttttttagggatttaaaattaataaaataggaccaaattgatgacga 22913281  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||   |||||||||| |||| ||||||| ||||  |||||| ||||||||||||||||||    
T  22913280 aaacaaagataaggatcaaattgaaacatttactagttaagggatccaactgagaaattaaaataagttaag 22913209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 9189588 - 9189390
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcga 103  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||         | |||||| |||||||||||||| ||| |||| ||    
T  9189588 agttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattga 9189489  T
Q  104 tgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagaga-cggaagatgcattaagc 201  Q
    |||   |||||||||||||| | ||||||||||||||||||||||| |||  | ||||| |||||||||||| ||||| || |||| |||| |||||||    
T  9189488 tgacagaaacaaagataaggaccaaattgaaacgtttaatagttaagggaccacactgagaaattaaaataaattaagggaccggaggatgtattaagc 9189390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 12820025 - 12820194
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacg-gatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||||| ||          | ||||| |||||||||||||||||| ||||||| || |    
T  12820025 ggtgttggtgatacacagttagatatgatgaacctcctttatccaacggtcttctttttgagagatttaaaattaataaaataggaccaaatcgacgacg 12820124  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagtt 178  Q
    ||||||||||||||| | ||||| ||||||||||||||||| |||   |||||| |||||||||||||||    
T  12820125 aaaacaaagataaggaccaaattaaaacgtttaatagttaagggaccgaactgagaaattaaaataagtt 12820194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 12818943 - 12818771
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacg-gatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||  |||||||||||||||| |||||||||||||| ||          | ||||| |||||||||||||||||  |||||||| | |    
T  12818943 ggtgttggtgatacagagttagatatgatgaacctcctttatccaacggtcttatttttgagagatttaaaattaataaaataggatcaaatcgataacg 12818844  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||| | | ||||||||| ||||||||||||| |||  ||||||| ||||||||||||||||||    
T  12818843 aaaacaaagataatgaccaaattgaaatgtttaatagttaagggaccaaactgagaaattaaaataagttaag 12818771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 23768475 - 23768584
Alignment:
Q  72 gatttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaa 171  Q
    ||||| |||||||||||||||||| |||| ||||| |||||||||||||||| | || || |||| ||||||||| || |||  ||||||||||| ||||    
T  23768475 gatttaaaattaataaaataggaccaaattgatgacgaaaacaaagataaggaccaatttaaaacatttaatagtgaagggaccaaactgaaaaactaaa 23768574  T
Q  172 ataagttaag 181  Q
    ||||||||||    
T  23768575 ataagttaag 23768584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 9404156 - 9404193
Alignment:
Q  212 tctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9404156 tctagggtgggagaccttaataggtctcctaccgtgag 9404193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 9406317 - 9406354
Alignment:
Q  212 tctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9406317 tctagggtgggagaccttaataggtctcctaccgtgag 9406354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 9369094 - 9369130
Alignment:
Q  213 ctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  9369094 ctagggtgggagaccttaataggtctcctaccgtgag 9369130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 9406895 - 9406851
Alignment:
Q  205 ggctcagtctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||    
T  9406895 ggctcggtctagtgtgggagaccttaataggtctcctaccgtgag 9406851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 9370147 - 9370115
Alignment:
Q  211 gtctagggtgggagaccttaataggtctcctac 243  Q
    |||||||||||||||||||||||||||||||||    
T  9370147 gtctagggtgggagaccttaataggtctcctac 9370115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 2421338 - 2421392
Alignment:
Q  127 aaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||  |||||| |||| ||| |||||||| ||||||||||||||||||    
T  2421338 aaattgaaacacttaatatttaagggactaaactgataaattaaaataagttaag 2421392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 39220750 - 39220693
Alignment:
Q  127 aaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagaga 184  Q
    ||||||||||  |||||||||||| ||  ||| ||| |||||||||||||||||||||    
T  39220750 aaattgaaacacttaatagttaatagaccaaaatgagaaattaaaataagttaagaga 39220693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 23768413 - 23768457
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaa 55  Q
    |||||| ||||||||||| |||||||||||| ||||| |||||||    
T  23768413 gtgttggtgatacacggtaagatatgatgaaattcctgtatccaa 23768457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 29344353 - 29344157
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||         | |||||||||||||| |||||||||| |||||||||| |    
T  29344353 ggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaaaaaaataggaccaaatcgatgacg 29344254  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagaga-cggaagatgcattaagccaa 204  Q
    ||||||||||||||| | ||||| ||||||||||||||||| || | ||||||| |||||||||||||||||| || ||| ||||| ||||||||||    
T  29344253 aaaacaaagataaggaccaaattaaaacgtttaatagttaaggggtcaaactgagaaattaaaataagttaagggaccgggagatgtattaagccaa 29344157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 47927566 - 47927392
Alignment:
Q  12 tgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatgaa 110  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||         | |||||| ||||||||||||| | || |||||||||  |||    
T  47927566 tgttggtggtacacggttagatatgatgaacttcctttatccaacgatcttattttttagggatttaaaattaataaaattgaaccaaatcgatgtagaa 47927467  T
Q  111 aacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagac 185  Q
    ||||||||||||| | |||| ||||| |||||||||||| ||| |||||||| ||||||||||||||||||||||    
T  47927466 aacaaagataaggaccaaatcgaaacatttaatagttaagggactaaactgagaaattaaaataagttaagagac 47927392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 47928357 - 47928536
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| ||         | |||||| ||||||||||||| |||| |||||||||  |    
T  47928357 ggtgttgatgatacatggttaaatatgatgaacttcctttatccaacggtcttgttttttagggatttaaaattaataaaattggaccaaatcgatgtag 47928456  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagacgga 188  Q
    ||||||||||||||| | |||||||||| ||||||||||||  || |||||| | |||||||||||||||||| ||||||    
T  47928457 aaaacaaagataaggaccaaattgaaacatttaatagttaagagactaaactaagaaattaaaataagttaagggacgga 47928536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 40881285 - 40881108
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcga 103  Q
    |||| ||||||| || ||||||||||||||||||||||||| ||||||||||| ||         | |||||| |||||||||||||| ||| |||| ||    
T  40881285 agttaggtgttggtggtacacggttagatatgatgaacttcttttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattga 40881186  T
Q  104 tgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||  |||| |||||||||| | ||||||||||| ||||||||||| |||  | ||||| ||||||||||||||||||    
T  40881185 tgacaaaaataaagataaggaccaaattgaaacggttaatagttaagggaccacactgagaaattaaaataagttaag 40881108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 47537029 - 47537139
Alignment:
Q  71 ggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaa 170  Q
    |||||| ||||||||||||||||||  ||| ||||| ||||| |||||||||| | |||||||||| |||||||||||| |||  ||||||| || ||||    
T  47537029 ggatttaaaattaataaaataggaccgaattgatgacgaaaataaagataaggaccaaattgaaacatttaatagttaagggaccaaactgagaagttaa 47537128  T
Q  171 aataagttaag 181  Q
    |||||||||||    
T  47537129 aataagttaag 47537139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 33071581 - 33071737
Alignment:
Q  26 ggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggt 124  Q
    |||||||||||||||||||||| ||||||||| ||         | |||||| ||||||||||||| |||  ||||| | || ||||||||||||||||     
T  33071581 ggttagatatgatgaacttcctatatccaacggtcttcttttttagggatttaaaattaataaaattggatcaaatcaacgacgaaaacaaagataagga 33071680  T
Q  125 caaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
      |||||||||| |||||||||||| | | |||||||| ||||||||||||||||||    
T  33071681 tcaaattgaaacatttaatagttaaggaactaaactgagaaattaaaataagttaag 33071737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 37783636 - 37783709
Alignment:
Q  71 ggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggtcaaaattgaaacgtttaata 144  Q
    ||||||||||||||||||||||||| || ||||||| |||||||||||||| | | ||||||||||||||||||    
T  37783636 ggatttcaaattaataaaataggaccaactcgatgacgaaaacaaagataaagaccaaattgaaacgtttaata 37783709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 37782084 - 37781974
Alignment:
Q  71 ggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaa 170  Q
    |||||| |||||||||||||||||| | ||  || | |||||||||||||||| | |||||||||| |||||||||||| | |  ||||||| |||||||    
T  37782084 ggatttaaaattaataaaataggaccatatttatcacgaaaacaaagataaggaccaaattgaaacatttaatagttaaagaaccaaactgagaaattaa 37781985  T
Q  171 aataagttaag 181  Q
    ||||| |||||    
T  37781984 aataatttaag 37781974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 33070783 - 33070654
Alignment:
Q  21 tacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagat 119  Q
    |||||||||||||||||||||||| |||||||||||| ||         | |||||| |||||||||||||| ||  |||| |||||  |||||||||||    
T  33070783 tacacggttagatatgatgaacttgctttatccaacggtcttcttttttatggatttaaaattaataaaatatgatcaaattgatgacaaaaacaaagat 33070684  T
Q  120 aaggtcaaaattgaaacgtttaatagttaa 149  Q
    || | | |||||||||||||||||||||||    
T  33070683 aaagaccaaattgaaacgtttaatagttaa 33070654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 47535780 - 47535709
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagtta 148  Q
    |||||||||||||||||| |||| |||||| ||||||||||| |||| | ||||||||||||||||||||||    
T  47535780 aaattaataaaataggaccaaattgatgataaaaacaaagataaaggaccaaattgaaacgtttaatagtta 47535709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 29345068 - 29345176
Alignment:
Q  71 ggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaa 170  Q
    |||||| |||||||||||||| ||  |||| ||||| |||| ||| ||||| | | ||||| |||| |||||||||||| |||| |||||||||||||||    
T  29345068 ggatttaaaattaataaaatacgatcaaattgatgacgaaagcaa-gataatgaccaaattaaaacatttaatagttaagggatcaaactgaaaaattaa 29345166  T
Q  171 aataagttaa 180  Q
    ||||| ||||    
T  29345167 aataaattaa 29345176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 23153625 - 23153696
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagtta 148  Q
    |||||||||||||| || ||||| |||||| ||||||||||| || | | ||||||||||||||||||||||    
T  23153625 aaattaataaaatatgattaaattgatgataaaaacaaagataaatgaccaaattgaaacgtttaatagtta 23153696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 4167510 - 4167446
Alignment:
Q  139 ttaatagttaatggattaaactgaaaaattaaaataagttaagaga-cggaagatgcattaagcc 202  Q
    ||||||||||| |||||||||||| ||| |||||||||||||| || |||| |||| ||||||||    
T  4167510 ttaatagttaagggattaaactgagaaaataaaataagttaagggatcggaggatgtattaagcc 4167446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 47817426 - 47817458
Alignment:
Q  211 gtctagggtgggagaccttaataggtctcctac 243  Q
    |||||||||||||||||||||||||||||||||    
T  47817426 gtctagggtgggagaccttaataggtctcctac 47817458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 47818481 - 47818446
Alignment:
Q  214 tagggtgggagaccttaataggtctcctaccgtgag 249  Q
    |||||||||||||||||| |||||||||||||||||    
T  47818481 tagggtgggagaccttaacaggtctcctaccgtgag 47818446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 39255729 - 39255689
Alignment:
Q  205 ggctcagtctagggtgggagaccttaataggtctcctaccg 245  Q
    ||||| |||||||||| ||||||||||||| ||||||||||    
T  39255729 ggctctgtctagggtgagagaccttaatagatctcctaccg 39255689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 205479 - 205674
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |          | ||||||||||||||||||||||||| |||||||||| |    
T  205479 ggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtattattttttatggatttcaaattaataaaataggacgaaatcgatgacg 205578  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagaga-cggaagatgcattaagcca 203  Q
    ||||||||||||||| | |||||||||||||||||| |||| |||  ||||||| |||||||||||||||||| || ||| ||||| |||||||||    
T  205579 aaaacaaagataaggaccaaattgaaacgtttaataattaagggaccaaactgagaaattaaaataagttaagggaccgggagatgtattaagcca 205674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 204726 - 204553
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| | ||         | |||||| |||||||||||||||||| |||| ||||| ||    
T  204726 gtgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctacttttttagggatttaaaattaataaaataggaccaaattgatgacga 204627  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaata---gttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||||||||||| | | |||||||||| |||||||   ||||| |||  || |||| ||||||||||||||||||    
T  204626 aaacaaagataatgaccaaattgaaacatttaataatagttaagggaccaa-ctgagaaattaaaataagttaag 204553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 20630598 - 20630767
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||| |          | |||||| ||||||||||||| |||| |||||||||| |    
T  20630598 ggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtattcttttttagggatttaaaattaataaaattggaccaaatcgatgacg 20630697  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagtt 178  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  20630698 aaaacaaagataaggaccaaattgaaacgtttaatagttaagggattaaactgagaaattaaaataagtt 20630767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 30179479 - 30179651
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||         | ||||||||||||||||||||||||| |||||||||| |    
T  30179479 ggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtctttttttttatggatttcaaattaataaaataggaccaaatcgatgacg 30179578  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||| | | ||||| |||||||||| | |||| |||  ||||||| |||||||||||| |||||    
T  30179579 aaaacaaagataaagaccaaattaaaacgtttaaaaattaagggaccaaactgagaaattaaaataaattaag 30179651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 33553300 - 33553464
Alignment:
Q  18 tgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacg-gatttcaaattaataaaataggactaaatcgatgatgaaaacaaa 116  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||          | ||||| |||||||||||||||||| |||||||||| |||||||||    
T  33553300 tgatacacggttagatatgatgagcttcctttattcaacggtcttctttttgagagatttaaaattaataaaataggaccaaatcgatgacgaaaacaaa 33553399  T
Q  117 gataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||| | |||||||||||||||||||||||  ||  ||||||||||||||||||||||||||    
T  33553400 gataaggaccaaattgaaacgtttaatagttaagagaccaaactgaaaaattaaaataagttaag 33553464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 39272137 - 39272312
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacg-gatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||| || || ||          | ||||| ||||||| |||||| ||  |||||| ||| |    
T  39272137 ggtgttggtgatacacggttagatatgatgaacttcctttattcatcggtcttcttttttagagatttaaaattaaaaaaatatgatcaaatcgctgacg 39272236  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagaga 184  Q
    ||||||||||||| | | ||||| ||||||||||||||||| |||  ||||||||||||| |||||||||||||||    
T  39272237 aaaacaaagataatgaccaaattaaaacgtttaatagttaaaggaccaaactgaaaaatttaaataagttaagaga 39272312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 30178670 - 30178562
Alignment:
Q  73 atttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaa 172  Q
    |||| |||||||||||||||||  |||| ||||| |||||||||||||| | | ||| |||||| ||| |||||||| |||  || |||| |||||||||    
T  30178670 atttaaaattaataaaataggatcaaattgatgacgaaaacaaagataacgaccaaactgaaacatttgatagttaagggaccaatctgagaaattaaaa 30178571  T
Q  173 taagttaag 181  Q
    |||||||||    
T  30178570 taagttaag 30178562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 371962 - 372083
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataag 176  Q
    |||||||||||||||||  |||| |||||||||||||||||| ||||   ||||||||||||||||||||||  ||| |||  ||||||| | ||||||     
T  371962 aaattaataaaataggatcaaattgatgatgaaaacaaagataaaggatcaaattgaaacgtttaatagttaggggactaatttgaaaaaat-aaataaa 372060  T
Q  177 ttaagagacggaagatgcattaa 199  Q
    |||||||| | |||||| |||||    
T  372061 ttaagagatgaaagatgtattaa 372083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 11873275 - 11873322
Alignment:
Q  205 ggctcagtctagggtgggagaccttaataggtctcctaccgtgagaga 252  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  11873275 ggctccgtctagggtgggagaccttgataggtctcctaccgtgagaga 11873322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 9033996 - 9034045
Alignment:
Q  203 aaggctcagtctagggtgggagaccttaataggtctcctaccgtgagaga 252  Q
    ||||||||||||||||||||||| ||| |||||||||| || ||||||||    
T  9033996 aaggctcagtctagggtgggagagcttgataggtctcccactgtgagaga 9034045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 11875801 - 11875761
Alignment:
Q  215 agggtgggagaccttaataggtctcctaccgtgagagacct 255  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  11875801 agggtgggagaccttgataggtctcctaccgtaagagacct 11875761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 9034808 - 9034770
Alignment:
Q  211 gtctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  9034808 gtctaggatgggagaccttgataggtctcctaccgtgag 9034770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 25570915 - 25570991
Alignment:
Q  127 aaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagacggaa-gatgcattaagcc 202  Q
    ||||||||||  ||||||||||| ||| || ||||| ||| |||||||||||||| ||| ||| |||| ||||||||    
T  25570915 aaattgaaacacttaatagttaagggactacactgagaaaataaaataagttaagggaccgaaggatgtattaagcc 25570991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 30178733 - 30178689
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaa 55  Q
    |||||| |||| ||| || ||||||||||||||||||||||||||    
T  30178733 gtgttggtgatgcactgtaagatatgatgaacttcctttatccaa 30178689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 21246403 - 21246574
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||         | |||||| |||||||||||||||||| |||||||||| ||    
T  21246403 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggattttaaattaataaaataggaccaaatcgatgacga 21246502  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||||||||||| | |  |||||||||||||||||||||| |||  ||||||| ||||||||||||||||||    
T  21246503 aaacaaagataatgaccgaattgaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaag 21246574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 43807623 - 43807453
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| ||         | |||||| | ||||||||||| |||  |||||||||||||    
T  43807623 gtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaatattaataaaattggatcaaatcgatgatga 43807524  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaa 180  Q
    |||||||||||||| | |||||||||| |||||||||||||||| |||||||| |||||||||||||||||    
T  43807523 aaacaaagataaggaccaaattgaaacatttaatagttaatggactaaactgagaaattaaaataagttaa 43807453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 43808443 - 43808642
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcga 103  Q
    |||| ||||||| || |||||||||||||||||||||||||||||||| |||| ||         | |||||| |||||||||||||| ||| |||||||    
T  43808443 agttaggtgttggtggtacacggttagatatgatgaacttcctttatctaacggtcttcttttttagggatttaaaattaataaaatatgaccaaatcga 43808542  T
Q  104 tgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagacggaa-gatgcattaagcc 202  Q
    ||| |||||||||||||| | | ||||||||||||||||||||||| |||  | ||||| |||||||||||||||||| ||| ||| |||| ||||||||    
T  43808543 tgacgaaaacaaagataatgaccaaattgaaacgtttaatagttaagggaccacactgagaaattaaaataagttaagggaccgaaggatgtattaagcc 43808642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 30743281 - 30743105
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcga 103  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||         | |||||| ||||||||||||| |||| |||||||    
T  30743281 agttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttgttttttagggatttaaaattaataaaattggaccaaatcga 30743182  T
Q  104 tgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaa 180  Q
    ||| |||||||||||||||| | |||||||||| |||||||||||| |||  | | ||| |||||||||||||||||    
T  30743181 tgacgaaaacaaagataaggaccaaattgaaacatttaatagttaagggaccacattgagaaattaaaataagttaa 30743105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 39937691 - 39937611
Alignment:
Q  261 agccgttggattgaatgagcacacaacaaatgaagtacacttgattatttctcatttgtttatcttcctctcatatttctc 341  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39937691 agccgttggattggatgagcacacaataaatgaagtacacttgattatttctcatttgtttatcttcctctcgtatttctc 39937611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 368 - 468
Target Start/End: Complemental strand, 39937491 - 39937392
Alignment:
Q  368 atattgatccaatcaattcaaacattcatattaacacttttaagtgaaaattaatgggataaacccaataaattcagacattgataatcaatgaagaaaa 467  Q
    |||| |||| ||| |||| |||||||||||||| |  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39937491 atatagatcaaataaatttaaacattcatatta-cttttttaagtgcaaattaatgggataaacccaataaattcagacattgataatcaatgaagaaaa 39937393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 9822840 - 9822700
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    |||||||  |||||||||||||||||||||||| |||||||||||||  ||         | |||||| ||||||||||||||| || ||||| |||| |    
T  9822840 ggtgttggggatacacggttagatatgatgaacctcctttatccaacagtcttcttttttagggatttaaaattaataaaatagaaccaaatcaatgacg 9822741  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaa 149  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  9822740 aaaacaaagataaggaccaaattgaaacgtttaatagttaa 9822700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 6815255 - 6815299
Alignment:
Q  205 ggctcagtctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  6815255 ggctcagtctagggtgggagaccttgataggtctcctaccgtgag 6815299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 1670199 - 1670244
Alignment:
Q  204 aggctcagtctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||    
T  1670199 aggctcagtctaaggtgggagaccttgataggtctcctaccgtgag 1670244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 28700061 - 28700024
Alignment:
Q  212 tctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28700061 tctagggtgggagaccttaataggtctcctaccgtgag 28700024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 26802002 - 26801936
Alignment:
Q  139 ttaatagttaatggattaaactgaaaaattaaaataagttaagaga-cggaagatgcattaagccaa 204  Q
    ||||||||||| |||| ||||||||||| ||||||||| ||||||| |||| |||| ||||||||||    
T  26802002 ttaatagttaagggatcaaactgaaaaaataaaataagctaagagaccggaggatgtattaagccaa 26801936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 22167850 - 22167796
Alignment:
Q  127 aaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||  |||||| |||| ||| |||||||| ||||||||||||||||||    
T  22167850 aaattgaaacacttaatatttaagggactaaactgagaaattaaaataagttaag 22167796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 43709026 - 43708849
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaactt-cctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgat 107  Q
    ||||||| || |||| ||||||||||||||||||| ||||||||||||| ||         | |||||| ||||||||||| | |||| ||||||||||     
T  43709026 ggtgttgttggtacatggttagatatgatgaactttcctttatccaacggtcttgttttttagggatttaaaattaataaatttggaccaaatcgatgac 43708927  T
Q  108 gaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagac 185  Q
    |||||||||||||||| | |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  43708926 gaaaacaaagataaggaccaaattgaaacatttaatagttaatggactaaactgagaaattaaaataagttaagagac 43708849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 43709796 - 43709995
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacgg-atttcaaattaataaaataggactaaatcga 103  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||          || |||| ||||||||||||| || | |||||||    
T  43709796 agttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttgttttttggggatttaaaattaataaaattggtccaaatcga 43709895  T
Q  104 tgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagacggaagatgcattaagcca 203  Q
    ||| |||||||||||||| | | ||||||||||||||||||||||| ||| || ||||| |||||||||||||||||| ||| |  |||| |||||||||    
T  43709896 tgacgaaaacaaagataaagaccaaattgaaacgtttaatagttaagggactacactgagaaattaaaataagttaagggaccggggatgtattaagcca 43709995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 47243144 - 47242969
Alignment:
Q  7 tttggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatg 105  Q
    |||||||||| || |||||  |||||||||||||||||||||||||||||| ||         | |||||| ||||||||||||| |||| |||||||||    
T  47243144 tttggtgttggtggtacacatttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgatg 47243045  T
Q  106 atgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    | |||||||||||||| | | ||||| |||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  47243044 acgaaaacaaagataaagaccaaattaaaacatttaatagttaagggattaaactgagaaattaaaataagttaag 47242969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 47572775 - 47572603
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||| ||         | |||||| ||||||||||||| |||| |||||||  | |    
T  47572775 ggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgacaacg 47572676  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||| | |||||||||| |||||||||||| ||| ||| |||| ||||||||||||||||||    
T  47572675 aaaacaaagataaggaccaaattgaaacatttaatagttaagggactaagctgagaaattaaaataagttaag 47572603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 26059712 - 26059905
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||| ||         | |||||| ||||||||||||| |||| |||||||||| |    
T  26059712 ggtgttgttggtacatggttagatatgatgaacttcctttatccaacggtcttgttttttagggatttaaaattaataaaattggaccaaatcgatgaag 26059811  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagacggaagatgcattaagcca 203  Q
    ||||||||||||||| | ||||  |||  |||||||||||||||| |||||||| |||||||||||| ||||| ||| || |||| |||||||||    
T  26059812 aaaacaaagataaggaccaaataaaaatatttaatagttaatggactaaactgagaaattaaaataaattaagggac-gaggatgtattaagcca 26059905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 50497184 - 50496990
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| || | ||||||||||||||||||||||||||||||||||| ||         | |||||| ||||||||||||| |||| |||||||||| |    
T  50497184 ggtgttgctggtgcacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgatgacg 50497085  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagac-ggaagatgcattaagcc 202  Q
    ||||||||||||||| | ||||| |||| |||||||||||| | | |||||||| ||||||||||||||| || ||| ||| |||| ||||||||    
T  50497084 aaaacaaagataaggaccaaattaaaacatttaatagttaaggaactaaactgagaaattaaaataagttgagggactggaggatgtattaagcc 50496990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 47243928 - 47244089
Alignment:
Q  21 tacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagat 119  Q
    ||||||||||||||||||||||||||||||||||||| ||         | |||||| |||||||||||||| ||| |||||||||| ||||||||||||    
T  47243928 tacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaatcgatgacgaaaacaaagat 47244027  T
Q  120 aaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||| | ||||||||| ||||||||||||| |||  | ||||| |||||||||||| |||||    
T  47244028 aaggaccaaattgaaatgtttaatagttaagggaccacactgagaaattaaaataaattaag 47244089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 26045259 - 26045149
Alignment:
Q  71 ggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaa 170  Q
    |||||| ||||||||||||| |||| |||||||||| |||||||||||||||| | ||||||||||||||||||||||| |||  | ||||| |||||||    
T  26045259 ggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagataaggactaaattgaaacgtttaatagttaagggaccacactgagaaattaa 26045160  T
Q  171 aataagttaag 181  Q
    |||||||||||    
T  26045159 aataagttaag 26045149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 47573582 - 47573743
Alignment:
Q  21 tacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacg-gatttcaaattaataaaataggactaaatcgatgatgaaaacaaagat 119  Q
    ||||||||||||||||||||||||||||||||||||| ||          | ||||| |||||||||||||| ||| ||||||||||  |||||||||||    
T  47573582 tacacggttagatatgatgaacttcctttatccaacggtcttctttttcagagatttaaaattaataaaatatgaccaaatcgatgacaaaaacaaagat 47573681  T
Q  120 aaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||| | ||||| ||||||||||||||||| |||  | ||||| ||||||||||||||||||    
T  47573682 aaggaccaaattaaaacgtttaatagttaagggaccacactgagaaattaaaataagttaag 47573743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 5417492 - 5417321
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| ||||||||||| ||||||||||||||||||| || ||| | ||         | |||||| |||||||||||||| ||| |||| ||||| ||    
T  5417492 gtgttggtgatacacggtaagatatgatgaacttccttgattcaatggtctacttttttagggatttaaaattaataaaatatgaccaaattgatgacga 5417393  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||   |||||||||| |||||||||||| |||  ||||||||||||||||||||||||||    
T  5417392 aaacaaagataaggatcaaattgaaacatttaatagttaagggaccaaactgaaaaattaaaataagttaag 5417321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 5418156 - 5418270
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatc-nnnnnnnnacggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||         | ||||||||||||||||||||||||| ||||| |||| |    
T  5418156 ggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaatcaatgacg 5418255  T
Q  109 aaaacaaagataagg 123  Q
    |||||||||||||||    
T  5418256 aaaacaaagataagg 5418270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 50497894 - 50498067
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacgg-atttcaaattaataaaataggactaaatcga 103  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||          || |||| |||||||||||||| | | |||||||    
T  50497894 agttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcatctttttttgggatttaaaattaataaaatatggccaaatcga 50497993  T
Q  104 tgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagt 177  Q
    |||  ||||||||||||| | | |||||||||||||||||| |||| |||  | ||||| ||||||||||||||    
T  50497994 tgacaaaaacaaagataatgaccaaattgaaacgtttaataattaagggaccacactgagaaattaaaataagt 50498067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 11482924 - 11482789
Alignment:
Q  71 ggatttcaaattaataaaataggactaaatcgatgatgaaaacaaaga-taaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaatta 169  Q
    |||||| |||||| |||||| |||| |||| ||||| ||||| ||| | ||||| | |||||||||| |||||||||||| |||  ||||||| ||||||    
T  11482924 ggatttaaaattactaaaatcggaccaaattgatgacgaaaaaaaaaaataaggaccaaattgaaacatttaatagttaagggaccaaactgagaaatta 11482825  T
Q  170 aaataagttaagaga-cggaagatgcattaagccaa 204  Q
    |||||||||||| || ||| ||||| ||||||||||    
T  11482824 aaataagttaagggaccgggagatgtattaagccaa 11482789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 48413485 - 48413537
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttatccaacg 57  Q
    |||| ||||||| || |||||||||||||||||||||||||||||||||||||    
T  48413485 agttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacg 48413537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 21569371 - 21569300
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagtta 148  Q
    |||||||||||||| || ||||| |||||||||||||||||| || | | ||||||||||||||||||||||    
T  21569371 aaattaataaaatatgattaaatagatgatgaaaacaaagataaatgaccaaattgaaacgtttaatagtta 21569300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 21570418 - 21570489
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagtta 148  Q
    |||||||||||||||||  |||| |||||||||||||||||| || | | ||||||||||||||||||||||    
T  21570418 aaattaataaaataggatcaaattgatgatgaaaacaaagataaatgaccaaattgaaacgtttaatagtta 21570489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 48413572 - 48413650
Alignment:
Q  103 atgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||| | |  | ||||  ||||||||||||||||||    
T  48413572 atgacgaaaacaaagataaggaccaaattgaaacgtttaatagttaaggaaccacactgggaaattaaaataagttaag 48413650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 42698656 - 42698728
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagttaa 149  Q
    |||| |||||||| ||||||||| |||||||||||||||||| || | | |||||||||||||||||| ||||    
T  42698656 aaataaataaaatgggactaaattgatgatgaaaacaaagataaatgaccaaattgaaacgtttaataattaa 42698728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 42859741 - 42859785
Alignment:
Q  205 ggctcagtctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||    
T  42859741 ggctcggtctagtgtgggagaccttaataggtctcctaccgtgag 42859785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 23668227 - 23668262
Alignment:
Q  214 tagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  23668227 tagggtgggagaccttaataggtctcctaccgtgag 23668262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 42860700 - 42860663
Alignment:
Q  212 tctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  42860700 tctagggtgggagaccttaataggtttcctaccgtgag 42860663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 23669291 - 23669259
Alignment:
Q  211 gtctagggtgggagaccttaataggtctcctac 243  Q
    |||||||||||||||||||||||||||||||||    
T  23669291 gtctagggtgggagaccttaataggtctcctac 23669259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 44217690 - 44217622
Alignment:
Q  82 taataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagttaa 149  Q
    |||||||||||||| |||| |||||||||||||||||| || | | ||||| |||||||||||| ||||    
T  44217690 taataaaataggaccaaattgatgatgaaaacaaagataaaagaccaaattaaaacgtttaataattaa 44217622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 11484527 - 11484477
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatc 60  Q
    ||||||| ||||||| ||| |||||| ||||||||||||||||||| ||||    
T  11484527 ggtgttggtgatacatggtaagatataatgaacttcctttatccaatgatc 11484477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 17319113 - 17319055
Alignment:
Q  127 aaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagac 185  Q
    ||||||||||  || ||||||||  ||| ||||||| ||||||||||||||||||||||    
T  17319113 aaattgaaacactttatagttaagagatcaaactgagaaattaaaataagttaagagac 17319055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 34438462 - 34438400
Alignment:
Q  142 atagttaatggattaaactgaaaaattaaaataagttaagaga-cggaagatgcattaagcca 203  Q
    |||||||| ||| |||||||| ||| ||||||||||||||||| ||| ||||| |||||||||    
T  34438462 atagttaagggactaaactgagaaaataaaataagttaagagatcgggagatgtattaagcca 34438400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 11883058 - 11883025
Alignment:
Q  214 tagggtgggagaccttaataggtctcctaccgtg 247  Q
    |||||||||||||||| |||||||||||||||||    
T  11883058 tagggtgggagacctttataggtctcctaccgtg 11883025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 33018706 - 33018673
Alignment:
Q  214 tagggtgggagaccttaataggtctcctaccgtg 247  Q
    |||||||||||||||| |||||||||||||||||    
T  33018706 tagggtgggagacctttataggtctcctaccgtg 33018673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 44159156 - 44159103
Alignment:
Q  127 aaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaa 180  Q
    ||||||||||  |||||||||||  ||| ||||||||||| |||||||||||||    
T  44159156 aaattgaaacacttaatagttaagagatcaaactgaaaaaataaaataagttaa 44159103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 51751486 - 51751441
Alignment:
Q  211 gtctagggtgggagaccttaataggtctcctacc-gtgagagacct 255  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||    
T  51751486 gtctacggtgggagaccttgataggtctcctaccggtgagagacct 51751441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 35347340 - 35347304
Alignment:
Q  211 gtctagggtgggagaccttaataggtctcctaccgtg 247  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  35347340 gtctagggtgggagacctttataggtcccctaccgtg 35347304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 53649006 - 53648963
Alignment:
Q  205 ggctcagtctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    ||||||||||||| ||||||||||| |||||| ||||||||||||    
T  53649006 ggctcagtctaggatgggagaccttgataggt-tcctaccgtgag 53648963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 24071370 - 24071563
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| || |||||||| |||||||||||||||||||||||||||| ||         | |||||| ||||||||||||| |||| |||| ||||| |    
T  24071370 ggtgttgttggtacacggtgagatatgatgaacttcctttatccaacggtcttgttttttagggatttaaaattaataaaattggaccaaatggatgacg 24071469  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagacggaagatgcattaagcc 202  Q
    ||||||||||||||| | |||||||||| ||||||| |||| | | ||||||||||||||||||||||||||| ||  || |||| ||||||||    
T  24071470 aaaacaaagataaggaccaaattgaaacatttaataattaaggaactaaactgaaaaattaaaataagttaagggatcgaggatgtattaagcc 24071563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 39134856 - 39134684
Alignment:
Q  10 ggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |          | |||||||||||||||||||||| || |||| ||||  |    
T  39134856 ggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtattcttttttagggatttcaaattaataaaatagcaccaaattgatgtcg 39134757  T
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||  | ||||||||||||||||||||||| |||  ||||||| || |||||||||||||||    
T  39134756 aaaacaaagataagaaccaaattgaaacgtttaatagttaagggaccaaactgagaatttaaaataagttaag 39134684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 11907089 - 11907260
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| | ||         | |||||| |||||||||||||| ||| |||| ||||| ||    
T  11907089 gtgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctacttttttagggatttaaaattaataaaatatgaccaaattgatgacga 11907188  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||||||||||||| | |||||||||| |||||||||||| |||  ||||||| ||||||||||||||||||    
T  11907189 aaacaaagataaggaccaaattgaaacatttaatagttaagggaccaaactgagaaattaaaataagttaag 11907260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 39135576 - 39135746
Alignment:
Q  11 gtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacgg-atttcaaattaataaaataggactaaatcgatgatga 109  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| | ||          || |||| |||||||||||||||||| |||| ||||| ||    
T  39135576 gtgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctacttttttggggatttaaaattaataaaataggaccaaattgatgagga 39135675  T
Q  110 aaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaa 180  Q
    |||||||||||| | | |||||||||| |||||||||||| |||  ||||||| |||||||||||||||||    
T  39135676 aaacaaagataatgaccaaattgaaacatttaatagttaagggagcaaactgagaaattaaaataagttaa 39135746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 4904381 - 4904221
Alignment:
Q  21 tacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnnacgga-tttcaaattaataaaataggactaaatcgatgatgaaaacaaagat 119  Q
    ||||||||||||||||||||||||||||||||||||| ||          | | ||| |||||||||||||| ||| |||||||||||||||||||||||    
T  4904381 tacacggttagatatgatgaacttcctttatccaacggtcttcttttttagaaatttaaaattaataaaatatgaccaaatcgatgatgaaaacaaagat 4904282  T
Q  120 aaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||| | |||||||||||||||||||||||  ||  | ||||||||||||||||||| ||||    
T  4904281 aaggac-aaattgaaacgtttaatagttaagagaccacactgaaaaattaaaataagataag 4904221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 23679318 - 23679170
Alignment:
Q  28 ttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggtca 126  Q
    |||||||||||||||||||||||||||||| ||         | |||||| | |||||||||||||||  |||||||||| ||||| |||||||||  |     
T  23679318 ttagatatgatgaacttcctttatccaacggtcttttttttgagggatttaatattaataaaataggatcaaatcgatgacgaaaataaagataagaact 23679219  T
Q  127 aaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataa 175  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  23679218 aaattgaaacgtttaatagttaagggaccaaactgaaaaattaaaataa 23679170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 23855494 - 23855642
Alignment:
Q  28 ttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagataaggtca 126  Q
    |||||||||||||||||||||||||||||| ||         | |||||| | |||||||||||||||  |||||||||| ||||| |||||||||  |     
T  23855494 ttagatatgatgaacttcctttatccaacggtcttttttttgagggatttaatattaataaaataggatcaaatcgatgacgaaaataaagataagaact 23855593  T
Q  127 aaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataa 175  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  23855594 aaattgaaacgtttaatagttaagggaccaaactgaaaaattaaaataa 23855642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 24070519 - 24070422
Alignment:
Q  84 ataaaataggactaaatcgatgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||| |||| ||||| ||||  ||||||||||||||| | ||||||||||||||||||||||| |||| | ||||| |||||||||||| |||||    
T  24070519 ataaaattggaccaaatcaatgacaaaaacaaagataaggaccaaattgaaacgtttaatagttaagggatcacactgagaaattaaaataaattaag 24070422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 42963210 - 42963281
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagtta 148  Q
    ||||||||||||||||| ||||| |||||||||||||||||| || | | ||||||||||||||||||||||    
T  42963210 aaattaataaaataggattaaattgatgatgaaaacaaagataaatgaccaaattgaaacgtttaatagtta 42963281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 8284271 - 8284343
Alignment:
Q  109 aaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||||||| | ||||| |||| ||||||||||||  || |||||||| ||||||||||||||||||    
T  8284271 aaaacaaagataaggaccaaattaaaacatttaatagttaagagactaaactgagaaattaaaataagttaag 8284343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 24070629 - 24070583
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttat 51  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||    
T  24070629 agttaggtgttggtgatacacggttagatatgatgaacttcctttat 24070583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 42962144 - 42962101
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagataa 121  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  42962144 aaattaataaaataggaccaaattgatgatgaaaacaaagataa 42962101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 12862975 - 12863041
Alignment:
Q  139 ttaatagttaatggattaaactgaaaaattaaaataagttaagagacgga-agatgcattaagccaa 204  Q
    ||||||||||| |||| ||||||| ||| |||||||||||||||||| || ||||| ||||||||||    
T  12862975 ttaatagttaagggatcaaactgagaaaataaaataagttaagagaccgagagatgtattaagccaa 12863041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 11906427 - 11906372
Alignment:
Q  126 aaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||| |||||||||||||| |||  ||||||| ||||||| ||||||||||    
T  11906427 aaaattgaagcgtttaatagttaagggaccaaactgagaaattaacataagttaag 11906372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 8188257 - 8188299
Alignment:
Q  139 ttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||    
T  8188257 ttaatagttaaaggatcaaactgaaaaaataaaataagttaag 8188299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 12830995 - 12831061
Alignment:
Q  139 ttaatagttaatggattaaactgaaaaattaaaataagttaagagacgga-agatgcattaagccaa 204  Q
    ||||||||||| |||| ||||||| ||| |||||||||||||| ||| || ||||| ||||||||||    
T  12830995 ttaatagttaagggatcaaactgagaaaataaaataagttaagggaccgagagatgtattaagccaa 12831061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 8187236 - 8187164
Alignment:
Q  127 aaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaagagacggaagatgcattaag 200  Q
    ||||||| || |||||||||||| |||||||||||| ||| |||||||| ||||| ||| | ||||| ||||||    
T  8187236 aaattgacacatttaatagttaa-ggattaaactgagaaaataaaataaattaagggaccggagatgtattaag 8187164  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 38603745 - 38603817
Alignment:
Q  78 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtcaaaattgaaacgtttaatagttaa 149  Q
    |||||||||||||||||| |||| |||||  ||||||||||| |||| | |  |||||| |||||||||||||    
T  38603745 aaattaataaaataggaccaaattgatgactaaaacaaagataaaggaccattttgaaaagtttaatagttaa 38603817  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 43070251 - 43070219
Alignment:
Q  214 tagggtgggagaccttaataggtctcctaccgt 246  Q
    |||||||||||||||| ||||||||||||||||    
T  43070251 tagggtgggagacctttataggtctcctaccgt 43070219  T

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Target: scaffold0041 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 84998 - 85175
Alignment:
Q  5 agtttggtgttgatgatacacggttagatatgatgaacttcctttatccaacgatcnnnnnnnn-acggatttcaaattaataaaataggactaaatcga 103  Q
    |||| ||||||| || ||||||||||||||||||||||||| ||||||||||| ||         | |||||| |||||||||||||| ||| |||| ||    
T  84998 agttaggtgttggtggtacacggttagatatgatgaacttcttttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattga 85097  T
Q  104 tgatgaaaacaaagataaggtcaaaattgaaacgtttaatagttaatggattaaactgaaaaattaaaataagttaag 181  Q
    |||  |||| |||||||||| | ||||||||||| ||||||||||| |||  | ||||| ||||||||||||||||||    
T  85098 tgacaaaaataaagataaggaccaaattgaaacggttaatagttaagggaccacactgagaaattaaaataagttaag 85175  T

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Target: scaffold0098 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 42404 - 42466
Alignment:
Q  140 taatagttaatggattaaactgaaaaattaaaataagttaagagacggaagatgcattaagcc 202  Q
    |||||||||| |||| ||||||| ||| |||||||||||||| ||| ||||||| ||||||||    
T  42404 taatagttaagggatcaaactgagaaaataaaataagttaagggaccgaagatgtattaagcc 42466  T

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Target: scaffold0427 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 6868 - 6912
Alignment:
Q  205 ggctcagtctagggtgggagaccttaataggtctcctaccgtgag 249  Q
    |||||||||||||||||||||  || |||||||||| ||||||||    
T  6868 ggctcagtctagggtgggagagtttgataggtctcccaccgtgag 6912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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