View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_15 (Length: 489)
Name: NF7737_low_15
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Complemental strand, 55124028 - 55123596
Alignment:
| Q |
9 |
aagaatatgccaaaaccaaactaatatgagagagaagtaacgaagctcatctcatc-----aattaagcaacaaatataatttgcaggaggtgggtgagt |
103 |
Q |
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| T |
55124028 |
aagaatatgccaaaaccaaactaatatgaga----agtaacgaagctcatctcatctcatcaattaagcaacaaatataatttgcaggaggtgggtgagt |
55123933 |
T |
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| Q |
104 |
aaaacaaattaaaaaagaaaagaagcagaatggagtctaagagaaggggtacagaattgaaacagggatggagaagaaagagcatggcttctgtttctgc |
203 |
Q |
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| T |
55123932 |
aaaacaaattaaaaaagaaaagaaacagaatggagtctaagagaaggggtacagaattgaaacagggatggaaaggaaagagcatggcttctgtttctgc |
55123833 |
T |
|
| Q |
204 |
acccccattccacttgctcatggtatttggcatcgtcattagcttgttatgtttttctcagtacaaaaacttcaaggctcagttacacaacactgccatc |
303 |
Q |
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| T |
55123832 |
acccccattccacttgttcatggtatttggcatcgtcattagcttgttatgtttttctcagtacaaaaacttcaaggctcagttacacaacactgccatc |
55123733 |
T |
|
| Q |
304 |
aactttcaattactcatcttcttcttccccttcttgcttatgtttttcattggttcatattctaccggtggaaagctcaactttcacaccctcggagcat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55123732 |
aactttcaattactcatcttcttcttccccttcttgcttatgtttttcattggttcatattctaccggtggaaagctcaactttcacaccctcggagcat |
55123633 |
T |
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| Q |
404 |
gacaaaatcaccttacccggtcaaccatcttaatctt |
440 |
Q |
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| T |
55123632 |
gacaaaatcaccttacccggtcaaccatcttaatctt |
55123596 |
T |
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