View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_17 (Length: 474)
Name: NF7737_low_17
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 206 - 464
Target Start/End: Original strand, 41966428 - 41966686
Alignment:
| Q |
206 |
acataatattcaaatgagttgtttatgtctcatctaacacctattgtgaaggtttagtttttaattccatcagtttccaacacaaagaaagaaacaaaga |
305 |
Q |
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| T |
41966428 |
acataatattcaaatgagttgtttatgtctcatctaacacctattgtgaaggtttagtttttaattccatcagtttccaacacaaagaaagaaacaaaga |
41966527 |
T |
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| Q |
306 |
tataatctgcctacaatgattattaaaaataatgttacttatctaagatgaggacacgagtgttatagtgaaactacgactttcaactctttcaaaagac |
405 |
Q |
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| T |
41966528 |
tataatctgcctacaatgattattaaaaataatgttatttatctaagatgaggacacgagtgttatagtgaaactacgactttcaactctttcaaaagac |
41966627 |
T |
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| Q |
406 |
aaacccaaccattccaaatggaaaaatccaatccaagactatagtattacttttctctg |
464 |
Q |
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| T |
41966628 |
aaacccaaccattccaaatggaaaaatccaatccaagactatagtattacttttctctg |
41966686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 41966238 - 41966393
Alignment:
| Q |
18 |
gaaaatggggtgtggaaatgaaattgaaagtagtgaaagagtgatatagttataggtttaccaaggatactagctagggtttaaagctcttgctatctct |
117 |
Q |
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| T |
41966238 |
gaaaatggggtgtggaaatgaaattgaaagtagtgaaagagtgatatagttataggtttaccaaggatactagctagggtttaaagctcttgctatctct |
41966337 |
T |
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| Q |
118 |
ctccaaacctctttaagtagatgaagataaaggggaattagggagaatagaggttg |
173 |
Q |
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| T |
41966338 |
ctccaaacctctttaagtagatgaagataaaggggaattagggagaatagaggttg |
41966393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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