View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_19 (Length: 451)
Name: NF7737_low_19
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 74 - 440
Target Start/End: Complemental strand, 30245167 - 30244808
Alignment:
| Q |
74 |
tcagcaccaataacatcagcctctcatccatgaccatgagaacaatgatgatgttgagttaaaacttctactcctaaaggacagccactattgatatttg |
173 |
Q |
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| T |
30245167 |
tcagcaccaattacatcaccctctcatccatga------gaacaatgatgatgttgagttaaaacttctactcctaaaggacagccactattgatatttg |
30245074 |
T |
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| Q |
174 |
gagtgatttttaaggacatctttatcaaattgatctatggctccattatatgaaagtccaatatcttgggggtccttaa-ctgt-----tgttatgtacc |
267 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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| T |
30245073 |
gagtgatttttaagtacatctttatcaaattgatctatggctccattatatgaaagtccaatatcttgggggtccttaatctttatcactgttatgtacc |
30244974 |
T |
|
| Q |
268 |
gttgtcctccacattcttccactcttccgtattcactttggtgatccttatcttttgattggtcctaagcacaaataaataaatatatttttaatgatga |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
30244973 |
gttgtcctccacattcttccactcttccgtattcactttggtgatccttatcttttgattggtcctaagcacagataaataa--atatttttaatgatga |
30244876 |
T |
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| Q |
368 |
actttatatatatcgaatttattcatatgatatccctatgcatgcacggtaccaagtaccaaccaacaccaaa |
440 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30244875 |
actttatatgtatcgaatttattc-----atatccctatgcatgcacggtaccaagttccaaccaacaccaaa |
30244808 |
T |
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