View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_low_21 (Length: 438)

Name: NF7737_low_21
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_low_21
NF7737_low_21
[»] chr3 (4 HSPs)
chr3 (177-417)||(19246039-19246276)
chr3 (177-417)||(17663384-17663621)
chr3 (18-104)||(17663850-17663936)
chr3 (18-104)||(19246351-19246437)
[»] chr2 (2 HSPs)
chr2 (19-104)||(33137629-33137714)
chr2 (285-341)||(33136695-33136751)
[»] chr1 (19 HSPs)
chr1 (27-97)||(45526202-45526272)
chr1 (20-94)||(35203174-35203248)
chr1 (25-97)||(35295189-35295261)
chr1 (20-94)||(35476988-35477062)
chr1 (27-92)||(8640315-8640380)
chr1 (20-97)||(35216965-35217042)
chr1 (28-99)||(35272922-35272993)
chr1 (27-97)||(35206425-35206495)
chr1 (27-97)||(35213583-35213653)
chr1 (18-104)||(35222780-35222866)
chr1 (193-243)||(35228634-35228684)
chr1 (20-93)||(35192834-35192907)
chr1 (21-94)||(45534400-45534473)
chr1 (28-96)||(35228446-35228514)
chr1 (20-97)||(35145221-35145298)
chr1 (177-243)||(35273052-35273118)
chr1 (28-89)||(35265360-35265421)
chr1 (17-97)||(35253926-35254006)
chr1 (177-277)||(35265523-35265623)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 177 - 417
Target Start/End: Complemental strand, 19246276 - 19246039
Alignment:
Q  177 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagaccttttttggtaaaagtgtttgccggtgaaggagattgtaagatg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  19246276 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagatcttttttggtaaaagtgtttgccagtgaaggagattgtaagatg 19246177  T
Q  277 atagagtcggaagtcagaaaacggtcccagacggtgtcggaatcggctgcagaacggaaagactttgaaaggatattagagagcctacaagcgtcaaccg 376  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||    
T  19246176 atagagtcggaagtaagaaaacggtcccagacggtgtcggaatcggctgcagaacggaaagactttgaaagga---tagagagcctacaagcatcaaccg 19246080  T
Q  377 gagtcgtacaagatagtatgatcgcgatgcacccttcaggc 417  Q
    ||||| |||||||||||||  ||||||||||||||||||||    
T  19246079 gagtcctacaagatagtatcgtcgcgatgcacccttcaggc 19246039  T

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Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 177 - 417
Target Start/End: Complemental strand, 17663621 - 17663384
Alignment:
Q  177 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagaccttttttggtaaaagtgtttgccggtgaaggagattgtaagatg 276  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||    
T  17663621 tacctttgtaccctggtcgatgatgatagggcgatcagatagagccatgtagagatcttttttggtaaaagtgtttgccagggaaggagattgtaagatg 17663522  T
Q  277 atagagtcggaagtcagaaaacggtcccagacggtgtcggaatcggctgcagaacggaaagactttgaaaggatattagagagcctacaagcgtcaaccg 376  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||||    
T  17663521 atagagtcggaaatcagaaaacggtcccagacggtgtcggaatcggctgcagaacggaaagactttgaaagga---tagagagcctgcaagcgtcaaccg 17663425  T
Q  377 gagtcgtacaagatagtatgatcgcgatgcacccttcaggc 417  Q
    |||| ||||||||||||||  ||||||||||||||||||||    
T  17663424 gagttgtacaagatagtatcgtcgcgatgcacccttcaggc 17663384  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 17663936 - 17663850
Alignment:
Q  18 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17663936 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 17663850  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 19246437 - 19246351
Alignment:
Q  18 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19246437 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 19246351  T

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Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 33137714 - 33137629
Alignment:
Q  19 tcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 104  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  33137714 tcaatggtgagagatctagcagcaagcatgtaacacttttgtccactctttctgtgcaattgaaagctctgcatttcaacatatac 33137629  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 33136751 - 33136695
Alignment:
Q  285 ggaagtcagaaaacggtcccagacggtgtcggaatcggctgcagaacggaaagactt 341  Q
    ||||||||||||||| | ||| || |||||||||||||| |||||| | ||||||||    
T  33136751 ggaagtcagaaaacgattccacaccgtgtcggaatcggccgcagaatgaaaagactt 33136695  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 45526202 - 45526272
Alignment:
Q  27 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    |||||||||||||||||||| ||||||||| | |||||||||||| | |||||||||||||||||||||||    
T  45526202 gagagatctagcagcaagcatgtaacacttttttccactctttctatccaattgaaagctctgcatttcaa 45526272  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 35203174 - 35203248
Alignment:
Q  20 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcattt 94  Q
    |||||| |||||||||||||||||||| ||||||||| | |||||||||||| | |||||||| |||||||||||    
T  35203174 caatggagagagatctagcagcaagcatgtaacacttttttccactctttctatccaattgaatgctctgcattt 35203248  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 35295261 - 35295189
Alignment:
Q  25 gtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    ||||||||||||||||||||||  |||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  35295261 gtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 35295189  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 35476988 - 35477062
Alignment:
Q  20 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcattt 94  Q
    |||||| |||||||||||||||||||| ||||||||| |  ||||||||||| | |||||||| |||||||||||    
T  35476988 caatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatccaattgaaggctctgcattt 35477062  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 8640315 - 8640380
Alignment:
Q  27 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcat 92  Q
    |||||||||||||||||||| ||||||||| | |||||||||||| | |||||||| |||||||||    
T  8640315 gagagatctagcagcaagcatgtaacacttttttccactctttctgtccaattgaacgctctgcat 8640380  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 35216965 - 35217042
Alignment:
Q  20 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    |||||| |||||||||||||| ||||| ||||||||| | |||||||||||| | |||||| || |||||||||||||    
T  35216965 caatggagagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaa 35217042  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 35272922 - 35272993
Alignment:
Q  28 agagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaaca 99  Q
    ||||||||||||| ||||| ||||||||| | |||||||||||| |  ||||||| ||||||||||||||||    
T  35272922 agagatctagcagaaagcatgtaacacttttttccactctttctctctaattgaatgctctgcatttcaaca 35272993  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 35206425 - 35206495
Alignment:
Q  27 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    |||||||||||||| ||||| ||||||||| | |||||||||||| | |||||| || |||||||||||||    
T  35206425 gagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaa 35206495  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 35213583 - 35213653
Alignment:
Q  27 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    ||||||||||||||||||||  ||||| || | |||||| ||||| | |||||||||||||||||||||||    
T  35213583 gagagatctagcagcaagcatataacatttttttccactttttctctccaattgaaagctctgcatttcaa 35213653  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 35222780 - 35222866
Alignment:
Q  18 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 104  Q
    |||||||  |||||||||||||||||||| |  |||||| | |||||||||||| | |||||||| |||||  ||||||||||||||    
T  35222780 atcaatgtcgagagatctagcagcaagcatgacacacttttttccactctttctatccaattgaacgctcttaatttcaacatatac 35222866  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 35228634 - 35228684
Alignment:
Q  193 tcgatgatgatagggcgatcagatagagccatgtagagaccttttttggta 243  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||||||    
T  35228634 tcgatgatgatagggcgatcagatagagcaatatagagatcttttttggta 35228684  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 35192834 - 35192907
Alignment:
Q  20 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatt 93  Q
    |||||| ||||||||||||||||||||  |||||||| | ||||||||| || | |||||||||||||| ||||    
T  35192834 caatggagagagatctagcagcaagcatataacacttttttccactcttcctatccaattgaaagctctacatt 35192907  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 45534400 - 45534473
Alignment:
Q  21 aatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcattt 94  Q
    ||||| |||||||||||||||||||| ||||||||| |  ||||| ||||| |  |||||||||||||||||||    
T  45534400 aatggcgagagatctagcagcaagcatgtaacactttttcccactatttctatctaattgaaagctctgcattt 45534473  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 35228446 - 35228514
Alignment:
Q  28 agagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttca 96  Q
    ||||||||||||| |||||  |||||||||| |||||||||||| | ||||||||| |||| |||||||    
T  35228446 agagatctagcagaaagcatataacacttctttccactctttctctccaattgaaaactctacatttca 35228514  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 35145221 - 35145298
Alignment:
Q  20 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    |||||| |||||||||||||| || || ||||||||| | || ||||| ||| | |||||||||||| ||||||||||    
T  35145221 caatggcgagagatctagcagaaaccatgtaacacttttttctactctctctattcaattgaaagctttgcatttcaa 35145298  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 35273052 - 35273118
Alignment:
Q  177 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagaccttttttggta 243  Q
    ||||||| || | ||||||||||||| |||||||||||||||||| |  |||||| | |||||||||    
T  35273052 tacctttttatcatgatcgatgatgacagggcgatcagatagagcaagatagagatcctttttggta 35273118  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 35265360 - 35265421
Alignment:
Q  28 agagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctg 89  Q
    ||||||||||||| ||||| ||||||||| | |||||||||||| | |||||| || |||||    
T  35265360 agagatctagcagaaagcatgtaacacttttttccactctttctgtccaattggaaactctg 35265421  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 35253926 - 35254006
Alignment:
Q  17 catcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 97  Q
    |||||| ||||||||| || | | ||| || |||||| || | |||||||||||| | ||||||||| |||||||||||||    
T  35253926 catcaaaggtgagagaccttgaatcaatcatgtaacaattttttccactctttctatccaattgaaaactctgcatttcaa 35254006  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 35265523 - 35265623
Alignment:
Q  177 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagaccttttttggtaaaagtgtttgccggtgaaggagattgtaagatg 276  Q
    ||||||| || | ||||||||||||||||| |||||||| ||||| |  || ||| |||||||||||  || ||| ||  |||||||||| ||| |||||    
T  35265523 tacctttttatcatgatcgatgatgataggacgatcagagagagcgagatacagagcttttttggtaggagcgttggcaagtgaaggagagtgtgagatg 35265622  T
Q  277 a 277  Q
    |    
T  35265623 a 35265623  T

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