View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_22 (Length: 434)
Name: NF7737_low_22
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 12168141 - 12167888
Alignment:
| Q |
1 |
aattatatataacttctacattttaacatgaaaaagtcctcataaatttggtgcaaatactagttttgattatattaataaaaatttcaagtcaataaaa |
100 |
Q |
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| T |
12168141 |
aattatatataacttctacattttaacatgaaaaagtcctcataaagttggtgcaaatactagttttgattatattaataaaaatttcaagtcaataaaa |
12168042 |
T |
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| Q |
101 |
aattgcagagcattaaatacatggtcgcatggaggatgatgttgagttaaatacttggtcgcagaaaatttgattattgatggagaggatcttatctctg |
200 |
Q |
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| T |
12168041 |
aattgcagagcattaaatacatggtcgcagggaggatgatgttgagttaaatacttggtcgcagaaaatttgattattgatggagaggatcttatctctg |
12167942 |
T |
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| Q |
201 |
atttgttatagtagttcgttatgtgtgttgttatggccttaattattattgtatggatg |
259 |
Q |
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| T |
12167941 |
atttgtta---tagttcgtta--tgtgttgttatggccttaattattattgtatggatg |
12167888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 295 - 422
Target Start/End: Complemental strand, 12167872 - 12167739
Alignment:
| Q |
295 |
ttaatttttggggatgatgctccggtagttatggt------gatgatttatgtagccaaaggtgcaattgcttaggaggtttgatattgtacaccttggt |
388 |
Q |
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| T |
12167872 |
ttaatttttggggatgatgctccggtagttatggttatggtgatgatttatgtggccaaaggtgcaattgcttaggaggtttgttattgtacaccttgtt |
12167773 |
T |
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| Q |
389 |
gttgcctaggtatcatattgattggttgatcttg |
422 |
Q |
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| T |
12167772 |
gttgcctaggtatcatattgattggttgatcttg |
12167739 |
T |
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