View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_24 (Length: 428)
Name: NF7737_low_24
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 5178952 - 5179348
Alignment:
| Q |
19 |
aatggaagcagaatcaataggtgatgtttgttgtgaacttgtaacacagctcgattgtgagctagaacttgcagacagcacacatgtcttcgagtcttgt |
118 |
Q |
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| T |
5178952 |
aatggaagcagaatcaataggtgatgtttgttgtgaacttgtaacacagctcgattgtgagctagaacttgcagacagcacacatgtcttcgagtcttgt |
5179051 |
T |
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| Q |
119 |
gcatggcttgcagcatgaaagtcccttgatacccatctccttagatcagaaatttcgtcctcaactatatttggtagctggacattatcttctagctgat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5179052 |
gcatggcttgcagcatgaaagtcccttgatacccatctccttagatcagaaatttcgtcctcaactatatttggtagctggacattatcttctagctgat |
5179151 |
T |
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| Q |
219 |
atttcatcggccagtctaagatcacattgtcgtttcttaagacggtgtaacatgagagctgttgcttctggtgctctaccaaactccccaacaggctcat |
318 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5179152 |
atttcatcggcccgtctaagatcacattgtcgtttcttaagacggtgtaacatgagagctgttgcttctggtgctctaccaaactccccaacaagctcat |
5179251 |
T |
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| Q |
319 |
attctcttgtacatgatttaggttatttgaattgtttggcttatggtatgaagtttggttgtcaaaaatactatctatgcttagttgcatttcttct |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5179252 |
attctcttgtacatgatttaggttatttgaattgtttggcttatggtatgaagtttggttgtcaaaaatactatctatgcttagttgcatttcttct |
5179348 |
T |
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