View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_low_25 (Length: 427)

Name: NF7737_low_25
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_low_25
NF7737_low_25
[»] scaffold0009 (1 HSPs)
scaffold0009 (28-256)||(188413-188632)
[»] scaffold0053 (1 HSPs)
scaffold0053 (147-223)||(8833-8909)
[»] chr5 (5 HSPs)
chr5 (154-224)||(42893394-42893464)
chr5 (147-224)||(21191004-21191081)
chr5 (147-209)||(32766880-32766942)
chr5 (147-187)||(17088362-17088402)
chr5 (147-187)||(19820336-19820376)
[»] chr7 (6 HSPs)
chr7 (147-224)||(21880186-21880263)
chr7 (147-187)||(18215145-18215185)
chr7 (147-192)||(5409779-5409824)
chr7 (147-192)||(29763137-29763182)
chr7 (147-187)||(1433530-1433570)
chr7 (147-187)||(43250075-43250115)
[»] chr2 (6 HSPs)
chr2 (147-224)||(2438667-2438744)
chr2 (147-222)||(38117107-38117182)
chr2 (158-224)||(30404809-30404875)
chr2 (147-187)||(11223801-11223841)
chr2 (147-223)||(18840961-18841037)
chr2 (147-187)||(37419825-37419865)
[»] chr4 (13 HSPs)
chr4 (147-187)||(18513183-18513223)
chr4 (147-224)||(23292934-23293011)
chr4 (156-223)||(34306761-34306828)
chr4 (147-192)||(3947709-3947754)
chr4 (147-224)||(8423666-8423743)
chr4 (147-188)||(11596305-11596346)
chr4 (155-224)||(38846968-38847037)
chr4 (154-187)||(40965342-40965375)
chr4 (147-192)||(42640590-42640635)
chr4 (151-187)||(944614-944650)
chr4 (147-187)||(3712461-3712501)
chr4 (147-187)||(22440565-22440605)
chr4 (147-187)||(24343584-24343624)
[»] chr3 (11 HSPs)
chr3 (147-222)||(18426985-18427060)
chr3 (147-223)||(55401110-55401186)
chr3 (154-224)||(40993290-40993360)
chr3 (147-192)||(3631750-3631795)
chr3 (147-224)||(20503499-20503576)
chr3 (154-187)||(25775578-25775611)
chr3 (147-183)||(2408598-2408634)
chr3 (148-192)||(4987229-4987273)
chr3 (147-187)||(11610580-11610620)
chr3 (147-187)||(24204989-24205029)
chr3 (147-187)||(34185060-34185100)
[»] chr1 (10 HSPs)
chr1 (154-224)||(1815291-1815361)
chr1 (154-224)||(40258888-40258958)
chr1 (147-187)||(2218299-2218339)
chr1 (147-187)||(16297229-16297269)
chr1 (147-192)||(6427541-6427586)
chr1 (147-224)||(18337363-18337440)
chr1 (147-187)||(10233327-10233367)
chr1 (162-194)||(16164267-16164299)
chr1 (147-223)||(22515835-22515911)
chr1 (147-187)||(42359397-42359437)
[»] scaffold0020 (1 HSPs)
scaffold0020 (157-187)||(135281-135311)
[»] chr8 (6 HSPs)
chr8 (154-224)||(36450709-36450779)
chr8 (159-192)||(12570458-12570491)
chr8 (159-192)||(12570684-12570717)
chr8 (147-224)||(14134733-14134810)
chr8 (147-223)||(5813627-5813703)
chr8 (147-187)||(44067598-44067638)
[»] chr6 (5 HSPs)
chr6 (154-224)||(28152132-28152202)
chr6 (147-192)||(8365456-8365501)
chr6 (147-224)||(34595168-34595245)
chr6 (147-219)||(4877982-4878053)
chr6 (147-223)||(32978847-32978923)
[»] scaffold0652 (1 HSPs)
scaffold0652 (147-224)||(410-487)


Alignment Details
Target: scaffold0009 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 28 - 256
Target Start/End: Complemental strand, 188632 - 188413
Alignment:
Q  28 tggtgtttcaggtcattcatttctgttatttcttatgtaaaaatttacannnnnnnnn--gttaaaattgattgcttctatgctaattaatgtctttttg 125  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||| ||||||||||| ||    
T  188632 tggtgtttcaggtaattcatttctgttatttcttatgtaaaaatttacatttttttgtttgttaaaattgattgcttctatgctagttaatgtctttctg 188533  T
Q  126 aattcattacaccctatcatccacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactgt 225  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||           ||||||||||||||||  ||| ||||||||||    
T  188532 aattcattacaccctatcatgcacggacactcctcggattaggcgtgtcctggtgtc-----------ggatacgacaccgacacttgttattacactgt 188444  T
Q  226 gaccttttcaaattattaacagtgtctgtgt 256  Q
    ||| ||||||||||||||  |||||| ||||    
T  188443 gactttttcaaattattaggagtgtccgtgt 188413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 8909 - 8833
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacact 223  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||| |  | |||||||||||  ||||||||||||    
T  8909 cacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacact 8833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 42893464 - 42893394
Alignment:
Q  154 actcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||||| ||||||||||||||||||||||||| ||||||  |  ||||||||||  |||||||||||||    
T  42893464 actcctcatattaggcgtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaattacactg 42893394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 21191004 - 21191081
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||| ||||||| |||||||||||||| || |||||||| ||||||  | |||||||||||  |||||||||||||    
T  21191004 cacggacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactg 21191081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 32766880 - 32766942
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgaca 209  Q
    |||||| |||||||||||||| ||| ||||||||||||||| |||| |  | |||||||||||    
T  32766880 cacggacactcctcagattagacgtatcctggtgtcggacacgtgtcgttttcgacaccgaca 32766942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 17088402 - 17088362
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| ||||||| |||||||||||||| |||||||||||    
T  17088402 cacggacactcctcggattaggcgtgtcccggtgtcggaca 17088362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 19820336 - 19820376
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| ||||||| |||||||||||||| |||||||||||    
T  19820336 cacggacactcctctgattaggcgtgtcccggtgtcggaca 19820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 21880263 - 21880186
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||| ||| ||| |||||||||||||||||||||||||| |||| |  | |||||||||||  |||||||||||||    
T  21880263 cacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactg 21880186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 18215145 - 18215185
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  18215145 cacggacactcctcagattaggcgtgtcccggtgtcggaca 18215185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 5409779 - 5409824
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgt 192  Q
    |||||| ||||||| |||||||||||||| ||||||||||| ||||    
T  5409779 cacggacactcctcggattaggcgtgtcccggtgtcggacacgtgt 5409824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 29763137 - 29763182
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgt 192  Q
    |||||| ||||||| |||||||||||||||| ||||||||| ||||    
T  29763137 cacggacactcctcggattaggcgtgtcctgatgtcggacacgtgt 29763182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 1433570 - 1433530
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| ||||||| |||||| |||||||||||||||||||    
T  1433570 cacggacactcctcggattagacgtgtcctggtgtcggaca 1433530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 43250115 - 43250075
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| |||||||  |||||||||||||||||||||||||    
T  43250115 cacggacactcctcgaattaggcgtgtcctggtgtcggaca 43250075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 2438667 - 2438744
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||| ||||||| |||||||||||||| ||||||||||| |||| |  | |||||||||||  |||||||||||||    
T  2438667 cacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactg 2438744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 38117107 - 38117182
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacac 222  Q
    |||||| || |||| |||||||||||||| ||||||||||| ||||||  | ||||||| |||  |||||||||||    
T  38117107 cacggacacccctcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccaacacttgtaattacac 38117182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 30404809 - 30404875
Alignment:
Q  158 ctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||||||||| ||||||||||||||||| |||| |  | |||| ||||||  |||||||||||||    
T  30404809 ctcagattaggcatgtcctggtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactg 30404875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 11223801 - 11223841
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| |||||||||||||||||||||| |||||| ||||    
T  11223801 cacggacactcctcagattaggcgtgtcccggtgtcagaca 11223841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 18840961 - 18841037
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacact 223  Q
    |||||| ||||||| ||||||| |||||| ||||||||||| |||| |  |  ||||||||||  ||||||||||||    
T  18840961 cacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacact 18841037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 37419865 - 37419825
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| ||||||| |||||||||||||| |||||||||||    
T  37419865 cacggacactcctcggattaggcgtgtcccggtgtcggaca 37419825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 18513183 - 18513223
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  18513183 cacggacactcctcagattaggcgtgtcctggtgtcggaca 18513223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 23292934 - 23293011
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||| ||||||| |||||||||||||| ||||||||||| |||| |  | |||||||||||  |||||||| ||||    
T  23292934 cacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactg 23293011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 34306761 - 34306828
Alignment:
Q  156 tcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacact 223  Q
    |||||||||||||||||||  ||||||||||| |||| |  | |||||||||||  ||||||||||||    
T  34306761 tcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacact 34306828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 3947709 - 3947754
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgt 192  Q
    |||||| ||||||| ||||||| |||||||||||||||||| ||||    
T  3947709 cacggacactcctcggattaggtgtgtcctggtgtcggacacgtgt 3947754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 8423666 - 8423743
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||| ||| ||| |||||||||||||| |||||||||||  ||| |  | |||||||||||| | |||||||||||    
T  8423666 cacggacacttctccgattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactg 8423743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 11596305 - 11596346
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaa 188  Q
    |||||| |||||||||||||||||||||| | ||||||||||    
T  11596305 cacggacactcctcagattaggcgtgtcccgatgtcggacaa 11596346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 38846968 - 38847037
Alignment:
Q  155 ctcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    ||||||||||||||  ||| ||||||||||||| |||| | || |||||| ||||  |||||||||||||    
T  38846968 ctcctcagattaggtatgttctggtgtcggacacgtgtcgtatccgacactgacacttgtaattacactg 38847037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 40965375 - 40965342
Alignment:
Q  154 actcctcagattaggcgtgtcctggtgtcggaca 187  Q
    ||||||||||||||||||||| ||||||||||||    
T  40965375 actcctcagattaggcgtgtcttggtgtcggaca 40965342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 42640635 - 42640590
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgt 192  Q
    |||||| ||||||| ||||||||||||||||||| |||||| ||||    
T  42640635 cacggaaactcctcggattaggcgtgtcctggtgccggacacgtgt 42640590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 944614 - 944650
Alignment:
Q  151 gagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||||||||||||||| |||||| |||||||||||    
T  944614 gagactcctcagattaggtgtgtcccggtgtcggaca 944650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 3712461 - 3712501
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| |||||||||||||| ||||||| |||||||||||    
T  3712461 cacggacactcctcagattagccgtgtcccggtgtcggaca 3712501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 22440565 - 22440605
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| ||||||| ||||||||||||||| ||||||||||    
T  22440565 cacggacactcctcggattaggcgtgtcctagtgtcggaca 22440605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 24343624 - 24343584
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| |||||||||| ||||||||||| |||||||||||    
T  24343624 cacggacactcctcagaataggcgtgtcccggtgtcggaca 24343584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 18427060 - 18426985
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacac 222  Q
    |||||| ||||||||||||||| |||||| |||| |||||| |||| | || |||||||||||| | |||||||||    
T  18427060 cacggacactcctcagattaggtgtgtcccggtgccggacacgtgtcgtatccgacaccgacatatataattacac 18426985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 55401186 - 55401110
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacact 223  Q
    |||||| ||||||| |||||||||||||  ||||||||||| |||| |  | |||||||||||  ||||||||||||    
T  55401186 cacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacact 55401110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 40993290 - 40993360
Alignment:
Q  154 actcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    ||||||| |||||||||||||| ||||||||||| |||| |  | |||||||||||  | |||||||||||    
T  40993290 actcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactg 40993360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 3631795 - 3631750
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgt 192  Q
    |||||| ||||||| || ||||||||||||||||||||||| ||||    
T  3631795 cacggacactcctcggactaggcgtgtcctggtgtcggacatgtgt 3631750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 20503576 - 20503499
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||| ||||||| |||||||||||||| |||||| |||| |||| |  | | |||||||||  |||||||||||||    
T  20503576 cacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactg 20503499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 25775611 - 25775578
Alignment:
Q  154 actcctcagattaggcgtgtcctggtgtcggaca 187  Q
    ||||||| ||||||||||||||||||||||||||    
T  25775611 actcctcggattaggcgtgtcctggtgtcggaca 25775578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 2408598 - 2408634
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcg 183  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  2408598 cacggagactccttagattaggcgtgtcccggtgtcg 2408634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 4987229 - 4987273
Alignment:
Q  148 acggagactcctcagattaggcgtgtcctggtgtcggacaagtgt 192  Q
    ||||| ||||||| |||||||||||||| ||||||||||| ||||    
T  4987229 acggacactcctcggattaggcgtgtcccggtgtcggacacgtgt 4987273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 11610620 - 11610580
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| |||||||||||||||||||||| | |||||||||    
T  11610620 cacggacactcctcagattaggcgtgtcccgatgtcggaca 11610580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 24204989 - 24205029
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| |||||||  |||||||||||||||||||||||||    
T  24204989 cacggacactcctcgaattaggcgtgtcctggtgtcggaca 24205029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 34185060 - 34185100
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| ||||||| |||||||||||||| |||||||||||    
T  34185060 cacggacactcctcggattaggcgtgtcccggtgtcggaca 34185100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 1815361 - 1815291
Alignment:
Q  154 actcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||||||||||||||||||| ||||||||||| |||| |  |  ||||||||||  |||||||||||||    
T  1815361 actcctcagattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactg 1815291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 40258888 - 40258958
Alignment:
Q  154 actcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    ||||||| |||||||||||||||||||||||||| |||| |  |  ||||||||||  |||||||||||||    
T  40258888 actcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactg 40258958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 2218339 - 2218299
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  2218339 cacggacactcctcagattaggcgtgtcctagtgtcggaca 2218299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 16297229 - 16297269
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  16297229 cacggacactcctcggattaggcgtgtcctggtgtcggaca 16297269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 6427586 - 6427541
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgt 192  Q
    |||||| |||| ||||||||||||||||| ||||||||||| ||||    
T  6427586 cacggacactcatcagattaggcgtgtcccggtgtcggacacgtgt 6427541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 18337440 - 18337363
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||| ||||||| ||| |||| |||||  |||||||||| ||||||  | |||||||||||  |||||||||||||    
T  18337440 cacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactg 18337363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 10233367 - 10233327
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| ||||||| ||||||| ||||||||||||||||||    
T  10233367 cacggacactcctctgattaggtgtgtcctggtgtcggaca 10233327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 16164267 - 16164299
Alignment:
Q  162 gattaggcgtgtcctggtgtcggacaagtgttg 194  Q
    |||||||||||||||||||||||||| ||||||    
T  16164267 gattaggcgtgtcctggtgtcggacacgtgttg 16164299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 22515835 - 22515911
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacact 223  Q
    |||||| ||||||| |||||||||||||  ||||||||| | |||| |  | |||||||||||  ||||||||||||    
T  22515835 cacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattacact 22515911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 42359397 - 42359437
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| ||||||| |||||||||||||| |||||||||||    
T  42359397 cacggacactcctcggattaggcgtgtcccggtgtcggaca 42359437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 135281 - 135311
Alignment:
Q  157 cctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||||||||||||||||||||||||||||    
T  135281 cctcagattaggcgtgtcctggtgtcggaca 135311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 36450709 - 36450779
Alignment:
Q  154 actcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    ||||||| |||||||||||||||||||||||||| | || |  | ||||||| |||  |||||||||||||    
T  36450709 actcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactg 36450779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 12570458 - 12570491
Alignment:
Q  159 tcagattaggcgtgtcctggtgtcggacaagtgt 192  Q
    ||||||||||||||||||||||||||||| ||||    
T  12570458 tcagattaggcgtgtcctggtgtcggacacgtgt 12570491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 12570684 - 12570717
Alignment:
Q  159 tcagattaggcgtgtcctggtgtcggacaagtgt 192  Q
    ||||||||||||||||||||||||||||| ||||    
T  12570684 tcagattaggcgtgtcctggtgtcggacacgtgt 12570717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 14134810 - 14134733
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||| |||||||  |||||||||||||||||| |||||| |||| |  |  ||||||||||| | |||||||||||    
T  14134810 cacggacactcctcgaattaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccgacatatataattacactg 14134733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 5813703 - 5813627
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacact 223  Q
    |||||| |||||||  ||||||||||||| ||||||||||| |||| |  | |||||||||||  |||| |||||||    
T  5813703 cacggacactcctccaattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttacact 5813627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 44067638 - 44067598
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggaca 187  Q
    |||||| |||||||  |||||||||||||||||||||||||    
T  44067638 cacggacactcctcgaattaggcgtgtcctggtgtcggaca 44067598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 28152202 - 28152132
Alignment:
Q  154 actcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    ||||||| |||||||| ||||| ||||||||||| |||| |  | |||||||||||  |||||||||||||    
T  28152202 actcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactg 28152132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 8365456 - 8365501
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgt 192  Q
    |||||||||||||| ||||||||||||||  |||||||||| ||||    
T  8365456 cacggagactcctcggattaggcgtgtcccagtgtcggacacgtgt 8365501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 34595245 - 34595168
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||| ||||||| ||||||| |||||| |||||| |||| |||| |  | |||||||||||  |||||||||||||    
T  34595245 cacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactg 34595168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 4878053 - 4877982
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaatta 219  Q
    |||||| ||||||| ||||||||||||||| |||||||||| |||| |  | |||||||||||  ||||||||    
T  4878053 cacggacactcctcggattaggcgtgtcct-gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatta 4877982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 32978847 - 32978923
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacact 223  Q
    |||||| ||||||  |||||| ||||||| ||||||||||| |||| |  | |||||||||||  ||||||||||||    
T  32978847 cacggacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacact 32978923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 410 - 487
Alignment:
Q  147 cacggagactcctcagattaggcgtgtcctggtgtcggacaagtgttggatacgacaccgacatgtgtaattacactg 224  Q
    |||||| ||||||| ||||||| |||||| ||||||||||| | || |  | |||||||||||  |||||||||||||    
T  410 cacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactg 487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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