View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_29 (Length: 414)
Name: NF7737_low_29
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Original strand, 2668237 - 2668625
Alignment:
| Q |
11 |
agtaattaagaagctcgttgtttatttagttagtggatttcagaaagaacagtgtctctcactcagttgttccagcatcgtcttatctttcatcgattga |
110 |
Q |
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| T |
2668237 |
agtaattaagaagctcgttgtttatttagttagtgaattctagaaagaacaatgtctctcactcagttgttccagcatcgccttacctttcatcgattga |
2668336 |
T |
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| Q |
111 |
gggtttcatcgtctaaaattcaatggcctatcagtcgatgtcggataacgtgatatttatttataggtgtaatggacctcatatttttaggctagaaata |
210 |
Q |
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| T |
2668337 |
aggtttcatcgtctaaaattcaatggcctatcagtcgatgtcggataacgtgatatttatttatagttgtaatggacctcatatttttaggctagaaata |
2668436 |
T |
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| Q |
211 |
ttaacttgaacccatgtagaacaatttccctcatgacttcaagagaatctagactattttcacgtcttaattctcttgtcttcttgcagttttttatttt |
310 |
Q |
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| T |
2668437 |
ttagcttaaacccatgtagaacaatttccttcatgacttcaagagaatctagactattttcacgttttaattctcttgtcttcttgcagttcttta-ttt |
2668535 |
T |
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| Q |
311 |
aatgtttaagatcatacaaacatatgacattaatatttccaaacaataaaaacaataagattggattaaaagataactaatgtttcaact |
400 |
Q |
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| T |
2668536 |
aatgtttaagatcatacaaacatatgacattaatattttcaaacaataaaaacaataagattggattaaaagataactaatgtttcaact |
2668625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 391
Target Start/End: Original strand, 2678872 - 2678964
Alignment:
| Q |
298 |
agttttttattttaatgtttaagatcatacaaacatatgacattaatatttccaaacaataaaaacaataagattggattaaaagataactaat |
391 |
Q |
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| T |
2678872 |
agttttttatttga-tgtctaaaatcatgcaaacatattacctttatatttgcaagcaataagaaccataagattggatgaaaagataactaat |
2678964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 2678724 - 2678803
Alignment:
| Q |
156 |
taacgtgatatttatttataggtgtaatggacctcatatttttaggctagaaatattaacttgaacccatgtagaacaatt |
236 |
Q |
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| T |
2678724 |
taacgtggcatttaataataggtgtaaacaacctcatatttttagggtagaaatattatcttaaacccat-tagaacaatt |
2678803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 31325382 - 31325315
Alignment:
| Q |
318 |
aagatcatacaaacatatgacattaatatttccaaacaataaaaacaataagattggattaaaagata |
385 |
Q |
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| T |
31325382 |
aagatcatacaaatatatggcattcatatttgtaagcattaagaacagtaagattggattaaaagata |
31325315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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