View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7737_low_3 (Length: 681)
Name: NF7737_low_3
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_3 |
 | |
|
| [»] scaffold0438 (2 HSPs) |
| | |
|
| [»] scaffold0713 (2 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0654 (2 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0438 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 366 - 670
Target Start/End: Complemental strand, 8819 - 8515
Alignment:
| Q |
366 |
ttttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaatgggaacacaccctttcaacattttcttgtcattga |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
8819 |
ttttcactattaatattgttgatattttggttatcttttttttatactaaagtgtttattaaaataggaacacaccctttgaacattttcttgtcattga |
8720 |
T |
|
| Q |
466 |
tatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatac |
565 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8719 |
tatttatgtttaaagtcatcaatactattatggtctctattaggaattatctatggcttattgagcaaatgatttgtaattgagatttgatggcatatac |
8620 |
T |
|
| Q |
566 |
tatggcatgagttttgagatgttgagaaatatgattttgatatatatgttattaaaagattttgatattaatatgtaattcatttggattggatttgcat |
665 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
8619 |
gatggcatgagttttgagatgttgagaaatatgattttgatatatatgtttttaaaagattttgatattattatgtaattcatttggattagatttgcat |
8520 |
T |
|
| Q |
666 |
ttcat |
670 |
Q |
| |
|
||||| |
|
|
| T |
8519 |
ttcat |
8515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 375 - 670
Target Start/End: Complemental strand, 11792 - 11496
Alignment:
| Q |
375 |
ttaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaatgggaacacaccctttcaacattttcttgtcattgatatttatgt |
474 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11792 |
ttaatattgttgatattttggttatcttttttttatgctaaagtgtttattaaaatgggaacacaccctttgaacattttcttgtcattgatatttatgt |
11693 |
T |
|
| Q |
475 |
ttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatg |
574 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
11692 |
ttaaagtcatcaatactattacggtctctattaggaattatctatggcttattgagcaaatgatttgtaattgagatttgatggcatatacgatggcatg |
11593 |
T |
|
| Q |
575 |
agttttgagatgttgagaaatatgattttgatatatatgttattaaaagattttgatattaatatgtaattca-tttggattggatttgcatttcat |
670 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11592 |
agttttgagatgttgagaaatatgattttgaaatatatgtttttaaaagattttgatattaatatgtaattcattttggattggatttgcatttcat |
11496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 375 - 670
Target Start/End: Complemental strand, 26341631 - 26341335
Alignment:
| Q |
375 |
ttaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaatgggaacacaccctttcaacattttcttgtcattgatatttatgt |
474 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26341631 |
ttaatattgttgatattttggttatcttttttttatgctaaagtgtttattaaaatgggaacacaccctttgaacattttcttgtcattgatatttatgt |
26341532 |
T |
|
| Q |
475 |
ttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatg |
574 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
26341531 |
ttaaagtcatcaatactattacggtctctattaggaattatctatggcttattgagcaaatgatttgtaattgagatttgatggcatatacgatggcatg |
26341432 |
T |
|
| Q |
575 |
agttttgagatgttgagaaatatgattttgatatatatgttattaaaagattttgatattaatatgtaattca-tttggattggatttgcatttcat |
670 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26341431 |
agttttgagatgttgagaaatatgattttgaaatatatgtttttaaaagattttgatattaatatgtaattcattttggattggatttgcatttcat |
26341335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 327 - 503
Target Start/End: Complemental strand, 4707731 - 4707558
Alignment:
| Q |
327 |
tcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttatta |
426 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||| |||||| |||| | || ||| |||||||||||| | |
|
|
| T |
4707731 |
tcgtcatatctgtgagttgataacgatcattatcgcatattttccctattaatattattgatactttgataat----tttctatgttaaagtgtttataa |
4707636 |
T |
|
| Q |
427 |
aaat-gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
503 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| || |||| |||||||| |
|
|
| T |
4707635 |
aaatggggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatgttattatggtctct |
4707558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 640
Target Start/End: Complemental strand, 26918348 - 26918231
Alignment:
| Q |
523 |
ttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgttattaaaa |
622 |
Q |
| |
|
|||||||||||| |||||| ||| | |||| | |||||||||||| ||||||||||||||| | |||||||| | |||||| ||||||||| || || |
|
|
| T |
26918348 |
ttattgagcaaaagatttgaaattgacgtttggttgcatatactatgacatgagttttgagatatggagaaatacggttttgagatatatgttcttggaa |
26918249 |
T |
|
| Q |
623 |
gattttgatattaatatg |
640 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26918248 |
atttttgatattaatatg |
26918231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 15998625 - 15998680
Alignment:
| Q |
339 |
tgagttgataatgatcattatcacatattttcactattaatattgttgatattttg |
394 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
15998625 |
tgagttgataacgatcattatcgcatattttccctattaatattattgatattttg |
15998680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 618
Target Start/End: Original strand, 18981354 - 18981640
Alignment:
| Q |
331 |
catagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaat |
430 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||| | ||| |||| ||||||||||||| || | | |||||| ||| | |||| |
|
|
| T |
18981354 |
catagatgtgagttgatgatgatcattatcacttattttaattatcgctattattgatattttggtgat----tttataagttaaagtatttctcaaaac |
18981449 |
T |
|
| Q |
431 |
gggaa-cacaccctttcaaca-ttttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa-ttatcaatggcttatt |
527 |
Q |
| |
|
||||| |||||||||| |||| |||||| || |||| ||| |||||||| ||||| |||| |||| |||||||| || ||| || || || ||||| |
|
|
| T |
18981450 |
gggaagcacaccctttgaacatttttctcatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctgtgatttatt |
18981549 |
T |
|
| Q |
528 |
gagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgttatt |
618 |
Q |
| |
|
||||||||| |||| |||| | ||||| | ||| ||||||| ||||||||||||| | |||||||| | |||||| | |||||||||| |
|
|
| T |
18981550 |
gagcaaatgttttgcaatcgatatttggttacatctactatgatgtgagttttgagatatggagaaatacggttttgagaaatatgttatt |
18981640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 142 - 615
Target Start/End: Complemental strand, 27562579 - 27562104
Alignment:
| Q |
142 |
gattttcatgaatccctttcaa-ccctaagtctagcaaattgggggttttgccaaattcttttatatatgggtagtgtgatcttaaataggtattaataa |
240 |
Q |
| |
|
||||||||||| || |||||| ||||| | ||| |||||||||||||||| | ||| ||||||| ||| || ||||||||||||| || || | || |
|
|
| T |
27562579 |
gattttcatgagtcaatttcaaaccctatgcctaacaaattgggggttttgtctaatccttttatctattcgttaggtgatcttaaataagttttcacaa |
27562480 |
T |
|
| Q |
241 |
gagttgaatgcattgtgtgatgttcagatgtggtgtaaattgctc-cagtgatcatttcggaaggcattgctaagaacggagctgactcgtcatagttgt |
339 |
Q |
| |
|
||| |||| | ||||| |||||||||||| |||| ||| |||| | ||| ||||||| || |||||||| ||| ||| || || |||||||||| |
|
|
| T |
27562479 |
gagctgaaagtattgtttgatgttcagattcggtggaaactgctttcggtggtcatttcagacaacattgctaggaatggatttgtttcttcatagttgt |
27562380 |
T |
|
| Q |
340 |
gagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaat--gggaaca |
437 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | || ||| |||||||||||| |||| ||||||| |
|
|
| T |
27562379 |
gagttgataacgatcattatcacatattttcactattaatattattgatattttgataat----tttctatgttaaagtgtttataaaaaatggggaaca |
27562284 |
T |
|
| Q |
438 |
caccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaaatg |
536 |
Q |
| |
|
| |||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||| ||||| ||| ||||||||||||||| |
|
|
| T |
27562283 |
cgccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggatttatctatgacttattgagcaaatg |
27562184 |
T |
|
| Q |
537 |
atttg-taatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
615 |
Q |
| |
|
||||| ||| | |||| | |||||||||||| |||| |||||||||| | |||||||| | |||||| ||| ||||| |
|
|
| T |
27562183 |
atttgaaaatagatgtttggttgcatatactatgacatgggttttgagatatggagaaatacggttttgagatacatgtt |
27562104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 413 - 615
Target Start/End: Complemental strand, 54352975 - 54352771
Alignment:
| Q |
413 |
taaagtgtttattaaaatgggaacacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa |
511 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||| |
|
|
| T |
54352975 |
taaagtgtttataaaaatgggga-acaccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggat |
54352877 |
T |
|
| Q |
512 |
ttatcaatggcttattga-gcaaatgatttg-taatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatata |
609 |
Q |
| |
|
||||| ||| |||||||| |||||||||| ||| || |||||| |||||||||||| ||||||||||||||| | |||||||| |||||||| ||| |
|
|
| T |
54352876 |
ttatctatgacttattgattaaaatgatttgaaaatagaggtttgattgcatatactatgacatgagttttgagatatggagaaatacgattttgagata |
54352777 |
T |
|
| Q |
610 |
tatgtt |
615 |
Q |
| |
|
|||||| |
|
|
| T |
54352776 |
tatgtt |
54352771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 18695402 - 18695346
Alignment:
| Q |
338 |
gtgagttgataatgatcattatcacatattttcactattaatattgttgatattttg |
394 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18695402 |
gtgagttgataacgatcattatcgcatattttccctattaatattattgatattttg |
18695346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 4764632 - 4764560
Alignment:
| Q |
431 |
gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
503 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
4764632 |
gggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
4764560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 4764705 - 4764663
Alignment:
| Q |
337 |
tgtgagttgataatgatcattatcacatattttcactattaat |
379 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
4764705 |
tgtgagttgataacgatcattatcgcatattttccctattaat |
4764663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 18695308 - 18695236
Alignment:
| Q |
431 |
gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
503 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| | |||||||||||||| ||| |||| |||||||| |
|
|
| T |
18695308 |
gggaacacaccctttgaactttttcttatcaatgatgctcgtgtttaaagtcatcgatattattatggtctct |
18695236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 327 - 615
Target Start/End: Complemental strand, 47051778 - 47051491
Alignment:
| Q |
327 |
tcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttatta |
426 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| | || ||| |||||||||| || |
|
|
| T |
47051778 |
tcgtcatatctgtgagttgataacgatcattatcatatattttcactattaatattattgatattttgataat----tttctatgttaaagtgttttata |
47051683 |
T |
|
| Q |
427 |
aaatggg-aacacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggctt |
524 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| | | ||||| ||| ||| |
|
|
| T |
47051682 |
aaatggggaacacaccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttgaatttatctatgactt |
47051583 |
T |
|
| Q |
525 |
attgagcaaatgatttg-taatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
615 |
Q |
| |
|
||||||||||||||||| ||| | |||| | |||||||||||| |||| |||||||||| | |||||||| | |||||| |||||||| |
|
|
| T |
47051582 |
attgagcaaatgatttgaaaatagatgtttggttgcatatactatgacatgggttttgagatatggagaaatacggttttgaggtatatgtt |
47051491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 413 - 615
Target Start/End: Original strand, 16099774 - 16099981
Alignment:
| Q |
413 |
taaagtgtttattaaaatggg-aacacaccctttcaacatttt---cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattag |
508 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| | |
|
|
| T |
16099774 |
taaagtgtttataaaaatggggaacacaccctttgaacatttttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttg |
16099873 |
T |
|
| Q |
509 |
gaattatcaatggcttattga-gcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgata |
607 |
Q |
| |
|
|| ||||| ||| |||||||| |||||||||| || || |||||| |||||||||||| ||||||||||||||| | |||||||| | |||||| | |
|
|
| T |
16099874 |
gatttatctatgacttattgattaaaatgatttgagatagaggtttgattgcatatactatgacatgagttttgagatatggagaaatacggttttgaga |
16099973 |
T |
|
| Q |
608 |
tatatgtt |
615 |
Q |
| |
|
|||||||| |
|
|
| T |
16099974 |
tatatgtt |
16099981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 503
Target Start/End: Complemental strand, 17654605 - 17654442
Alignment:
| Q |
337 |
tgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaat-gggaa |
435 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| | || ||| |||||| ||||| ||||| ||||| |
|
|
| T |
17654605 |
tgtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataat----tttctatgttaaagtttttataaaaatggggaa |
17654510 |
T |
|
| Q |
436 |
cacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
503 |
Q |
| |
|
|||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
17654509 |
cacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
17654442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 667
Target Start/End: Complemental strand, 47051308 - 47051262
Alignment:
| Q |
621 |
aagattttgatattaatatgtaattcatttggattggatttgcattt |
667 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
47051308 |
aagattttgatattaatatgtaattgatttgaattggatttgaattt |
47051262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 512 - 584
Target Start/End: Complemental strand, 29290083 - 29290011
Alignment:
| Q |
512 |
ttatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgaga |
584 |
Q |
| |
|
||||| ||| ||||||||||||| |||||| ||| || |||| | || ||||||||| |||||||||||||| |
|
|
| T |
29290083 |
ttatctatgacttattgagcaaaagatttgaaattgaggtttggttgcttatactatgacatgagttttgaga |
29290011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 6e-42; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 337 - 615
Target Start/End: Complemental strand, 39155883 - 39155605
Alignment:
| Q |
337 |
tgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaat--ggga |
434 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | || ||| |||||||||||| |||| |||| |
|
|
| T |
39155883 |
tgtgagttgataacgatcattatcacatattttcactattaatattattgatattttgataat----tttctatgttaaagtgtttataaaaaatgggga |
39155788 |
T |
|
| Q |
435 |
acacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaa |
533 |
Q |
| |
|
|||| |||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||| ||||| ||| |||||||||||| |
|
|
| T |
39155787 |
acacgccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggatttatctatgacttattgagcaa |
39155688 |
T |
|
| Q |
534 |
atgatttg-taatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
615 |
Q |
| |
|
|||||||| ||| | |||| | |||||||||||| || | |||||||||| | |||||||| | |||||| ||| ||||| |
|
|
| T |
39155687 |
atgatttgaaaatagatgtttggttgcatatactatgacacgggttttgagatatggagaaatacggttttgagatacatgtt |
39155605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 258 - 618
Target Start/End: Complemental strand, 809993 - 809633
Alignment:
| Q |
258 |
tgatgttcagatgtggtgtaaattgctccagtgatcatttcggaaggcattgctaagaacggagctgactcgtcatagttgtgagttgataatgatcatt |
357 |
Q |
| |
|
|||||||||||| |||| |||||||||| ||| ||||| | ||||||| ||| ||| ||| | |||||||| ||||||||||||| ||||||| |
|
|
| T |
809993 |
tgatgttcagattcggtggaaattgctccggtggtcattcagaaaggcatccctaggaattgagttctttcgtcatatctgtgagttgataacgatcatt |
809894 |
T |
|
| Q |
358 |
atcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaa---tgggaacacaccctttcaacatttt |
454 |
Q |
| |
|
||| ||||||||| ||||||||||| ||||||||||| | || ||| |||||||||||| |||| ||||||||||||||| ||| |||| |
|
|
| T |
809893 |
atcgcatattttccctattaatattattgatattttgataat----tttctatgttaaagtgtttataaaaaaatggggaacacaccctttgaacttttt |
809798 |
T |
|
| Q |
455 |
cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa-ttatcaatggcttattgagcaaatgatttgtaatcaagattt |
553 |
Q |
| |
|
||| ||| |||| | ||||||||||||||| ||| |||| |||||||| || ||| || || ||| |||||||||||||| |||| |||| |||||| |
|
|
| T |
809797 |
cttatcaatgatgctcatgtttaaagtcatcgatattattatggtctctgttttgaacttgtctatgatttattgagcaaatgttttgcaatcgagattt |
809698 |
T |
|
| Q |
554 |
gatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgttatt |
618 |
Q |
| |
|
| | ||||||||||| ||||||||||||| | |||||||| | |||||| | |||||||||| |
|
|
| T |
809697 |
ggttacatatactatgatgtgagttttgagatatggagaaatacggttttgagaaatatgttatt |
809633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 15001940 - 15001885
Alignment:
| Q |
339 |
tgagttgataatgatcattatcacatattttcactattaatattgttgatattttg |
394 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15001940 |
tgagttgataacgatcattatcacatattttcactattaatattattgatattttg |
15001885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 462 - 618
Target Start/End: Original strand, 44323141 - 44323298
Alignment:
| Q |
462 |
ttgatatttatgtttaaagtcatcaatactattctggtctctattaggaa-ttatcaatggcttattgagcaaatgatttgtaatcaagatttgatggca |
560 |
Q |
| |
|
|||| ||| |||||||| ||||| |||| |||| |||||||| || ||| || || ||| |||||||||||||| |||| |||||||||||||| || |
|
|
| T |
44323141 |
ttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattgagcaaatgttttgcaatcaagatttgattaca |
44323240 |
T |
|
| Q |
561 |
tatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgttatt |
618 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||| | || ||| | |||||||||| |
|
|
| T |
44323241 |
tatactatgatgtgagttttgagatatggagaaatacggttatgagaaatatgttatt |
44323298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 565
Target Start/End: Complemental strand, 9312440 - 9312312
Alignment:
| Q |
438 |
caccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaaatg |
536 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||| |||||||| ||||||| |||||| |||| || ||||| ||| |||||||| |||| |
|
|
| T |
9312440 |
caccctttcaagatttttcttctcattgatatttatgttgaaagtcattgatactataatggtctttatttagatttatctatgacttattgaacaaaca |
9312341 |
T |
|
| Q |
537 |
atttgtaatcaagatttgatggcatatac |
565 |
Q |
| |
|
||||| ||| ||||||| | |||||||| |
|
|
| T |
9312340 |
atttgaaattgagatttggttgcatatac |
9312312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 615
Target Start/End: Original strand, 10414983 - 10415098
Alignment:
| Q |
500 |
ctctattaggaattatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatga |
599 |
Q |
| |
|
||||||| ||| ||||| ||| ||||||||||||| |||||| ||| || |||| | || ||||||||| ||||||||||||| | ||||||| | |
|
|
| T |
10414983 |
ctctatttggatttatctatgacttattgagcaaaagatttgaaattgaggtttggttgcctatactatgatatgagttttgagaaatgaagaaatacgg |
10415082 |
T |
|
| Q |
600 |
ttttgatatatatgtt |
615 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
10415083 |
ttttgagatatatgtt |
10415098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 2587553 - 2587599
Alignment:
| Q |
621 |
aagattttgatattaatatgtaattcatttggattggatttgcattt |
667 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||| |||| |
|
|
| T |
2587553 |
aagattttgatattaatatgtaattggtttgaattggatttgaattt |
2587599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 6e-36; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 337 - 615
Target Start/End: Original strand, 19433944 - 19434221
Alignment:
| Q |
337 |
tgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaatggg-aa |
435 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| | || || |||||||||||| |||||||| || |
|
|
| T |
19433944 |
tgtgagttgataacgatcattatcacatatttttactattaatattattgatattttgataat----tttctatcttaaagtgtttataaaaatggggaa |
19434039 |
T |
|
| Q |
436 |
cacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaaa |
534 |
Q |
| |
|
|| |||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| | | ||||| ||| ||||||||||||| |
|
|
| T |
19434040 |
catgccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttgaatttatctatgacttattgagcaaa |
19434139 |
T |
|
| Q |
535 |
tgatttg-taatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
615 |
Q |
| |
|
||||||| ||| | |||| | ||||| |||||| |||| ||||| |||| | |||||||| | |||||| ||||||||| |
|
|
| T |
19434140 |
tgatttgaaaatagatgtttggttgcatagactatgacatgggttttcagatatggagaaatacggttttgagatatatgtt |
19434221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 143 - 369
Target Start/End: Complemental strand, 29755291 - 29755061
Alignment:
| Q |
143 |
attttcatgaatccctttcaac-cctaagtctagcaaattgggggttttgccaaattcttttatatatgggtagtgtga--tcttaaataggtattaata |
239 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| || |||||| ||||| | ||||||||||| ||| |||||||||| ||||||||| || | | | |
|
|
| T |
29755291 |
attttcatgagtccctttcaaatcctaagtctaacagattggga-ttttgtctaattcttttatctattggtagtgtgagatcttaaataagttattaca |
29755193 |
T |
|
| Q |
240 |
agagttgaatgcattgtgtgatgttcagatgtggtgtaaattgctccagtgatcatttcggaaggcattgctaagaacggagctgactcgtc--atagtt |
337 |
Q |
| |
|
| ||| || ||||| |||||||||||| |||| ||||||||| |||||| ||| |||||| ||||| ||||||| || ||| ||||| |||||| |
|
|
| T |
29755192 |
aaagtcaaaactattgtatgatgttcagattcggtgaaaattgctctagtgattattacggaagacattgttaagaacatagttgattcgtcatatagtt |
29755093 |
T |
|
| Q |
338 |
gtgagttgataatgatcattatcacatatttt |
369 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||| |
|
|
| T |
29755092 |
gtgagttgatcacgatcattatcatatatttt |
29755061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 431 - 615
Target Start/End: Complemental strand, 5706687 - 5706501
Alignment:
| Q |
431 |
gggaacacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattga |
529 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| |||| ||| |||||||| ||| | |||| || | ||||||||||| ||| ||||| ||| |||||||| |
|
|
| T |
5706687 |
gggaacacaccctttcaatatttttcttgttgttgaaatt-atgtttaaggtcgtgaatattaatatggtctctatttggatttatctatgacttattga |
5706589 |
T |
|
| Q |
530 |
gcaaa-tgatttgtaatca-agatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
615 |
Q |
| |
|
||| ||||||| || | || |||||| |||||||||||| ||||||||||||||| | |||||||| | |||||| | ||||||| |
|
|
| T |
5706588 |
ttaaaatgatttgaaaatagaggtttgattgcatatactatgacatgagttttgagatatggagaaatacggttttgagagatatgtt |
5706501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 327 - 393
Target Start/End: Complemental strand, 6912580 - 6912514
Alignment:
| Q |
327 |
tcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatatttt |
393 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||| |||||||||| |
|
|
| T |
6912580 |
tcgtcataactgtgagttgataacgatcattatcgcatattttccctattaatattattgatatttt |
6912514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 9688103 - 9688060
Alignment:
| Q |
162 |
aaccctaagtctagcaaattgggggttttgccaaattcttttat |
205 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
9688103 |
aaccctaagtctagaaaattgggggttttaccaaattcttttat |
9688060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 19434404 - 19434450
Alignment:
| Q |
621 |
aagattttgatattaatatgtaattcatttggattggatttgcattt |
667 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
19434404 |
aagattttgatattaatatgtaattgatttgaattggatttgaattt |
19434450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 6912475 - 6912403
Alignment:
| Q |
431 |
gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
503 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
6912475 |
gggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
6912403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 413 - 533
Target Start/End: Complemental strand, 29469499 - 29469378
Alignment:
| Q |
413 |
taaagtgtttattaaaatggg-aacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa |
511 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||||| | || | ||||||||||| ||| |
|
|
| T |
29469499 |
taaagtgtttataaaaatggggaacacaccctttcaatattttcttgtcattgatacttacatttaaagtcatcaaaattaatatggtctctatttggat |
29469400 |
T |
|
| Q |
512 |
ttatcaatggcttattgagcaa |
533 |
Q |
| |
|
| ||| ||| ||||||||||| |
|
|
| T |
29469399 |
tcatctatgatttattgagcaa |
29469378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 36265701 - 36265597
Alignment:
| Q |
266 |
agatgtggtgtaaattgctccagtgatcatttcggaaggcattgctaagaacggagctgactcgtcatagttgtgagttgataatgatcattatcacata |
365 |
Q |
| |
|
|||||||||| |||||||| | | | |||||||||||| ||||||| ||| |||| ||||||||||||||||||||||||| | |||||||||||| || |
|
|
| T |
36265701 |
agatgtggtgaaaattgcttcggcggtcatttcggaagaaattgctaggaatggagttgactcgtcatagttgtgagttgatgaggatcattatcactta |
36265602 |
T |
|
| Q |
366 |
ttttc |
370 |
Q |
| |
|
||||| |
|
|
| T |
36265601 |
ttttc |
36265597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 320 - 585
Target Start/End: Original strand, 28802516 - 28802778
Alignment:
| Q |
320 |
agctgactcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtg |
419 |
Q |
| |
|
|||||| |||||||| |||||||||| | ||||||||||||||||||||| ||| |||| |||||||||| | || ||| ||||||| |
|
|
| T |
28802516 |
agctgattcgtcataacagtgagttgatgacgatcattatcacatattttcattatcgttattattgatatttttatgat----tttatatgttaaagtg |
28802611 |
T |
|
| Q |
420 |
tttattaaaatggg-aacacaccctttcaacattt-tcttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatca |
517 |
Q |
| |
|
||||| |||||||| ||||||| |||| ||||||| || | ||||||||| ||||| | |||||||| ||| ||| ||||||||||| || ||||| |
|
|
| T |
28802612 |
tttataaaaatggggaacacactctttgaacatttctcctctcattgatacttatggtaaaagtcattgatattatcatggtctctatttagatttatcc |
28802711 |
T |
|
| Q |
518 |
atggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagat |
585 |
Q |
| |
|
|| |||||||||||||||||||| ||| ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
28802712 |
ttg-cttattgagcaaatgatttgaaattgagatttggctgcatatacaatgacatgagttttgagat |
28802778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 8555275 - 8555214
Alignment:
| Q |
144 |
ttttcatgaatccctttcaaccctaagtctagcaaattgggggttttgccaaattcttttat |
205 |
Q |
| |
|
||||||||| | ||||| |||||||||| ||| ||||| ||||||||| | ||||||||||| |
|
|
| T |
8555275 |
ttttcatgagttcctttaaaccctaagtatagaaaatttggggttttgtctaattcttttat |
8555214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 29469549 - 29469512
Alignment:
| Q |
351 |
gatcattatcacatattttcactattaatattgttgat |
388 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
29469549 |
gatcattatcacatatcttcactattaatattattgat |
29469512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 30943335 - 30943411
Alignment:
| Q |
323 |
tgactcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttat |
399 |
Q |
| |
|
|||||| ||||| || ||||||||||| |||||||||| ||||||| | |||| |||| ||||||||||| |||| |
|
|
| T |
30943335 |
tgactcttcataattatgagttgataacaatcattatcatatattttaattattgttattattgatattttgcttat |
30943411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 52 - 347
Target Start/End: Original strand, 21849368 - 21849651
Alignment:
| Q |
52 |
ttgaggtaaaactttgtgatacataaaattaagagttgatatctagcttagatgagtagtgatactagtatagaaagnnnnnnnntcattgattttcatg |
151 |
Q |
| |
|
||||||||||||||| |||| ||| ||||| ||||| |||||||||||| | ||||||||| |||||| |||||| | | ||||||| |
|
|
| T |
21849368 |
ttgaggtaaaactttatgattcatgaaatttagagtggatatctagcttgggtgagtagtggaactagtttagaaa-------------ttaatttcatg |
21849454 |
T |
|
| Q |
152 |
aatccctttcaaccct-aagtctagcaaattgggggttttgccaaattcttttatatatgggtagtgtgatcttaaataggtattaataagagttgaatg |
250 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||||| ||||| |||||||| ||| || |||| |||||||||||||| | | | ||||| |||| |
|
|
| T |
21849455 |
aatccctttcaaaccttaagtctaacaaattggggattttgtcaaattctactatcgattggtattgtgatcttaaataagctgttacaagagctgaaat |
21849554 |
T |
|
| Q |
251 |
cattgtgtgatgttcagatgtggtgtaaattgctccagtgatcatttcggaaggcattgctaagaacggagctgactcgtcatagttgtgagttgat |
347 |
Q |
| |
|
|||| | |||||||||| |||| |||||||| ||| | |||||| |||||||||||| ||||| || |||||||||||| |||||||||||| |
|
|
| T |
21849555 |
tgttgtatcatgttcagatccggtgaggattgctccggtggttatttcgaaaggcattgctaggaacgaagttgactcgtcatatttgtgagttgat |
21849651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 52 - 347
Target Start/End: Original strand, 21857282 - 21857565
Alignment:
| Q |
52 |
ttgaggtaaaactttgtgatacataaaattaagagttgatatctagcttagatgagtagtgatactagtatagaaagnnnnnnnntcattgattttcatg |
151 |
Q |
| |
|
||||||||||||||| |||| ||| ||||| ||||| |||||||||||| | ||||||||| |||||| |||||| | | ||||||| |
|
|
| T |
21857282 |
ttgaggtaaaactttatgattcatgaaatttagagtggatatctagcttgggtgagtagtggaactagtttagaaa-------------ttaatttcatg |
21857368 |
T |
|
| Q |
152 |
aatccctttcaaccct-aagtctagcaaattgggggttttgccaaattcttttatatatgggtagtgtgatcttaaataggtattaataagagttgaatg |
250 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||||| ||||| |||||||| ||| || |||| |||||||||||||| | | | ||||| |||| |
|
|
| T |
21857369 |
aatccctttcaaaccttaagtctaacaaattggggattttgtcaaattctactatcgattggtattgtgatcttaaataagctgttacaagagctgaaat |
21857468 |
T |
|
| Q |
251 |
cattgtgtgatgttcagatgtggtgtaaattgctccagtgatcatttcggaaggcattgctaagaacggagctgactcgtcatagttgtgagttgat |
347 |
Q |
| |
|
|||| | |||||||||| |||| |||||||| ||| | |||||| |||||||||||| ||||| || |||||||||||| |||||||||||| |
|
|
| T |
21857469 |
tgttgtatcatgttcagatccggtgaggattgctccggtggttatttcgaaaggcattgctaggaacgaagttgactcgtcatatttgtgagttgat |
21857565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 413 - 529
Target Start/End: Complemental strand, 5520590 - 5520474
Alignment:
| Q |
413 |
taaagtgtttattaaaatgggaacacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa |
511 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||| |||||||| | | ||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||| |
|
|
| T |
5520590 |
taaagtgtttataaaaatgggga-acaccctttgaacatttttcctctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggat |
5520492 |
T |
|
| Q |
512 |
ttatcaatggcttattga |
529 |
Q |
| |
|
||||| ||| |||||||| |
|
|
| T |
5520491 |
ttatctatgacttattga |
5520474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 615
Target Start/End: Original strand, 42784544 - 42784725
Alignment:
| Q |
436 |
cacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa-ttatcaatggcttattgagcaa |
533 |
Q |
| |
|
|||||||||| |||||||| ||| || |||| ||| |||||||| ||||| |||| |||| |||||||| || ||| || || ||| ||||||||||| |
|
|
| T |
42784544 |
cacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattgagcaa |
42784643 |
T |
|
| Q |
534 |
atgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
615 |
Q |
| |
|
||| |||| |||| |||||| | ||| ||||||| ||||||||||||| | |||||||| |||||||| | ||||||| |
|
|
| T |
42784644 |
atgttttgcaatcgagatttagttacatctactatgatgtgagttttgagatatagagaaatacgattttgagaaatatgtt |
42784725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 587
Target Start/End: Original strand, 15597662 - 15597837
Alignment:
| Q |
413 |
taaagtgtttattaaaatggg-aacacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattagga |
510 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||| || ||||| | | ||||||||| ||||||| | |||||| ||| |||| |||||||||||| |
|
|
| T |
15597662 |
taaagtatttataaaaatggggaacacaccctttgaagatttttcctctcattgatacttatgttaacagtcattgatattattatggtctctattaatt |
15597761 |
T |
|
| Q |
511 |
attatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgt |
587 |
Q |
| |
|
| |||| || |||||||||||| ||||| ||| ||||||| | |||||||| ||| ||||||||||| ||||| |
|
|
| T |
15597762 |
a-tatctttgatttattgagcaaagaatttgaaattgagatttggttgcatatacaatgacatgagttttgtgatgt |
15597837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 339 - 503
Target Start/End: Original strand, 4060 - 4221
Alignment:
| Q |
339 |
tgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaat-gggaaca |
437 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| | || ||| |||||| ||||| ||||| ||||||| |
|
|
| T |
4060 |
tgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataat----tttctatgttaaagtttttataaaaatggggaaca |
4155 |
T |
|
| Q |
438 |
caccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
503 |
Q |
| |
|
|||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
4156 |
caccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
4221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 13 - 85
Alignment:
| Q |
431 |
gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
503 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
13 |
gggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
85 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 337 - 501
Target Start/End: Original strand, 9821613 - 9821774
Alignment:
| Q |
337 |
tgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaat-gggaa |
435 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| | || ||| |||||||||||| ||||| ||||| |
|
|
| T |
9821613 |
tgtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataat----tttatatgttaaagtgtttataaaaatggggaa |
9821708 |
T |
|
| Q |
436 |
cacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtct |
501 |
Q |
| |
|
|||||||||| ||| |||||| ||| |||| | ||||||||||||||| ||| |||| |||||| |
|
|
| T |
9821709 |
cacaccctttgaactttttctcctcaatgatgctcatgtttaaagtcatcgatattattatggtct |
9821774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 436 - 618
Target Start/End: Original strand, 22013006 - 22013190
Alignment:
| Q |
436 |
cacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa-ttatcaatggcttattgagcaa |
533 |
Q |
| |
|
|||||||||| |||||||| ||| || |||| ||| |||||||| ||||| |||| |||| |||||||| || ||| || || ||| ||||||||||| |
|
|
| T |
22013006 |
cacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattgagcaa |
22013105 |
T |
|
| Q |
534 |
atgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgttatt |
618 |
Q |
| |
|
||| |||| |||||||||||||| ||||||||||| ||||||||||||| | |||||||| | || ||| | |||||||||| |
|
|
| T |
22013106 |
atgttttgcaatcaagatttgattacatatactatgatgtgagttttgagatatggagaaatacggttatgagaaatatgttatt |
22013190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 28039675 - 28039731
Alignment:
| Q |
338 |
gtgagttgataatgatcattatcacatattttcactattaatattgttgatattttg |
394 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
28039675 |
gtgagttgataacgatcattatcacatatttttactattaatattattgatattttg |
28039731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 33062074 - 33062146
Alignment:
| Q |
431 |
gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
503 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
33062074 |
gggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
33062146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 21448683 - 21448748
Alignment:
| Q |
142 |
gattttcat-gaatccctttcaaccctaagtctagcaaa-ttgggggttttgccaaattcttttat |
205 |
Q |
| |
|
||||||||| || ||| ||| |||||||||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
21448683 |
gattttcatagattccttttaaaccctaagtctagaaaaattgggggttttaccaaattcttttat |
21448748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 327 - 503
Target Start/End: Original strand, 2595 - 2771
Alignment:
| Q |
327 |
tcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttatta |
426 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| | || ||| |||||||||||| | |
|
|
| T |
2595 |
tcgtcataactgtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataat----tttctatgttaaagtgtttataa |
2690 |
T |
|
| Q |
427 |
aaat----gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
503 |
Q |
| |
|
||| ||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| || ||||| |
|
|
| T |
2691 |
aaaaaatggggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatgttctct |
2771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 661
Target Start/End: Complemental strand, 4520 - 4480
Alignment:
| Q |
621 |
aagattttgatattaatatgtaattcatttggattggattt |
661 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
4520 |
aagattttgatattaatatgtactccatttggattggattt |
4480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 661
Target Start/End: Complemental strand, 5874 - 5834
Alignment:
| Q |
621 |
aagattttgatattaatatgtaattcatttggattggattt |
661 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
5874 |
aagattttgatattaatatgtactccatttggattggattt |
5834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 661
Target Start/End: Complemental strand, 115800 - 115760
Alignment:
| Q |
621 |
aagattttgatattaatatgtaattcatttggattggattt |
661 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
115800 |
aagattttgatattaatatgtactccatttagattggattt |
115760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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