View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7737_low_31 (Length: 405)
Name: NF7737_low_31
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 24 - 389
Target Start/End: Complemental strand, 8524635 - 8524267
Alignment:
| Q |
24 |
actgaaaagaagccttctttgtttaccaagtattcaagaactagatatgtcatataatga---acttcaaggccaacttccagaattaagttgcagcact |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8524635 |
actgaaaagaagccttctttgtttaccaggtattcaagaactagatatgtcatttaatgatgaacttcaaggccaacttccagaattaagttgcaacact |
8524536 |
T |
|
| Q |
121 |
tctcttagaatcttgcatctgttaaattgtcaattccaagggaaaattccaatgtctttttataacctcacacatcttacatctttaacactatcaggaa |
220 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||| |||||| ||||| ||||| ||||||||||| ||| | |
|
|
| T |
8524535 |
tctcttagaatcttggatctgtcaaattgtcaattccatggggaaattccaatgtctttttctaacctaacacaccttacctctttaacactctcatata |
8524436 |
T |
|
| Q |
221 |
acaacctaaacggttcaatctcattctcacttttaacacttccacgtctaacttacttggatctcagattgaacgaactcagtggttcaattccaaatgc |
320 |
Q |
| |
|
|| ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
8524435 |
actacctaaatggttcaatcccatcctcacttttaacacttccacgtctaacttacttgggtctcatttacaacgaactcagtggtccaattccaaatgc |
8524336 |
T |
|
| Q |
321 |
atttcaaatttcaaacaattttcaagaattagttttgagttataacaatattgaaggtgagcttccaac |
389 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
8524335 |
atttgaaatttcaaacaattttcaagaattagttttgagtaataacaaaattgaaggtgagcttccaac |
8524267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 38 - 389
Target Start/End: Complemental strand, 11119949 - 11119595
Alignment:
| Q |
38 |
ttctttgtttaccaagtattcaagaactagatatgtcatataatg--aacttc-aaggccaacttccagaattaagttgcagcacttctcttagaatctt |
134 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
11119949 |
ttctttgtttaccaagtattcaagagctatatatgtcggataatcccaactttgaaggccaacttccagaattgagttgcagcatttctcttagaatctt |
11119850 |
T |
|
| Q |
135 |
gcatctgttaaattgtcaattccaagggaaaattccaatgtctttttataacctcacacatcttacatctttaacactatcaggaaacaacctaaacggt |
234 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| || ||||||| ||||||| |||||||||| ||||||| || ||| | ||| |||||||||| |
|
|
| T |
11119849 |
agatctgtcagtttgtcaattccaagggaaaattcctatttctttttctaacctcgcacatcttacctctttaattctctcaagtaaccgcctaaacggt |
11119750 |
T |
|
| Q |
235 |
tcaatctcattctcacttttaacacttccacgtctaacttacttggatctcagattgaacgaactcagtggttcaattccaaatgcatttcaaatttcaa |
334 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| |||||||||| | | ||| ||||||||||| |||||||||||||||||| || |||| |
|
|
| T |
11119749 |
tcaatcccatcctcacttttaacacttccacgtctaactttcttggatctcggttacaaccaactcagtggtcgaattccaaatgcatttcagatgtcaa |
11119650 |
T |
|
| Q |
335 |
acaattttcaagaattagttttgagttataacaatattgaaggtgagcttccaac |
389 |
Q |
| |
|
|||| |||||| |||||| ||||||| ||||||| |||||||||| | ||||||| |
|
|
| T |
11119649 |
acaaatttcaaaaattagatttgagtcataacaaaattgaaggtgtggttccaac |
11119595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 24 - 284
Target Start/End: Complemental strand, 42130411 - 42130148
Alignment:
| Q |
24 |
actgaaaagaagccttctttgtttaccaagtattcaagaactagatatgtcatata---atgaacttcaaggccaacttccagaattaagttgcagcact |
120 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
42130411 |
actgaaaagaagccttatttgtttagcaagtattcaagagctagatatgtcatataatgatgaacttcaaggccaacttccagaattgagttgtagcact |
42130312 |
T |
|
| Q |
121 |
tctcttagaatcttgcatctgttaaattgtcaattccaagggaaaattccaatgtctttttataacctcacacatcttacatctttaacactatcaggaa |
220 |
Q |
| |
|
|||||||||||| | || ||| | ||| |||| ||||| ||||||| |||| ||||| |||||||||||||||||| ||| |||| || || | |
|
|
| T |
42130311 |
tctcttagaatcatagatttgtcaggatgtgcattcgaaggggaaattcctatgtatttttctaacctcacacatcttacctctctaactctctcgaata |
42130212 |
T |
|
| Q |
221 |
acaacctaaacggttcaatctcattctcacttttaacacttccacgtctaacttacttggatct |
284 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
42130211 |
acaacctaaacggttcaatcccatcatcacttttaacacttccacgtctaactttcttgcatct |
42130148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 24 - 389
Target Start/End: Complemental strand, 42125177 - 42124809
Alignment:
| Q |
24 |
actgaaaagaagccttctttgtttaccaagtattcaagaactagatatgtcatataat---gaacttcaaggccaacttccagaattaagttgcagcact |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||| |||| ||||| |||||||| ||||| || ||| |
|
|
| T |
42125177 |
actgaaaagaagcctactttgtttaccaagtattcaagagttagatatgtcatataatcacaaccttgaaggacaactaccagaattgagttgtagtact |
42125078 |
T |
|
| Q |
121 |
tctcttagaatcttgcatctgttaaattgtcaattccaagggaaaattccaatgtctttttataacctcacacatcttacatctttaacactatcaggaa |
220 |
Q |
| |
|
||||||||||| || || | | | ||| |||| ||||| ||||||| ||||||||| ||||||||||||| | || || |||| || |||| || |
|
|
| T |
42125077 |
tctcttagaatattagatttttcacgttgctcattcaaaggggaaattcctttgtctttttctaacctcacacatttcaccactctaactctgtcagaaa |
42124978 |
T |
|
| Q |
221 |
acaacctaaacggttcaatctcattctcacttttaacacttccacgtctaacttacttggatctcagattgaacgaactcagtggttcaattccaaatgc |
320 |
Q |
| |
|
|| | ||||| ||||||||| ||| ||||||||||| ||||||| |||||||| |||||||||| ||| |||||| |||| | |||||||||| |
|
|
| T |
42124977 |
accatctaaatggttcaatcccatcctcacttttaaaacttccaactctaactttcttggatctccataacaaccaactcaatggtcgacttccaaatgc |
42124878 |
T |
|
| Q |
321 |
atttcaaatttcaaacaattttcaagaattagttttgagttataacaatattgaaggtgagcttccaac |
389 |
Q |
| |
|
|||||| || |||||||| ||||||||||||| |||||| |||||| |||||||||||||| ||||| |
|
|
| T |
42124877 |
atttcagatatcaaacaaatttcaagaattagatttgagaggtaacaaaattgaaggtgagctgccaac |
42124809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 42118613 - 42118427
Alignment:
| Q |
24 |
actgaaaagaagccttctttgtttaccaagtattcaagaactagatatgtcatataatgaacttcaaggccaacttccagaattaagttgcagc------ |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||| ||||||||||||| ||||||| || ||||||||| ||||||||| ||||||||| |
|
|
| T |
42118613 |
actgaaaagaagcctactttgtttaccaagcatggaagagctagatatgtcatttaatgaatttgaaggccaacatccagaattgagttgcagcaatact |
42118514 |
T |
|
| Q |
118 |
acttctcttagaatcttgcatctgttaaattgtcaattccaagggaaaattccaatgtctttttataacctcacacatcttacatct |
204 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||||||||||||||||||| || |||||| |||| ||||| ||||||||||| |
|
|
| T |
42118513 |
acttctcttagaatcttagatctgtcaggttgtcaattccaagggaaaattcctatttcttttactaacttcacatatcttacatct |
42118427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 34231245 - 34231335
Alignment:
| Q |
38 |
ttctttgtttaccaagtattcaagaactagatatgtcatataatg---aacttcaaggccaacttccagaattaagttgcagcacttctct |
125 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||| || || || |||||||| |
|
|
| T |
34231245 |
ttctttgtttaccaagtattcaagagctagatatgtcatataatgaccaccttgaaggccaacttccagaattgagctgtagtacttctct |
34231335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 41570447 - 41570604
Alignment:
| Q |
38 |
ttctttgtttaccaagtattcaagaactagatatgtcatataatgaa---cttcaaggccaacttccagaattaagttgcagcacttctcttagaatctt |
134 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||| | ||||| ||| |||| ||||||||||| || || || |||||||||||||||||||| |
|
|
| T |
41570447 |
ttctttgtttaccaaatattcaagagctagatatgtcaaagaatgataaccttgaaggtcaacttccagatttgagctgtagcacttctcttagaatctt |
41570546 |
T |
|
| Q |
135 |
gcatctgttaaattgtcaattccaagggaaaattccaatgtctttttataacctcaca |
192 |
Q |
| |
|
| |||| | | |||||| |||| ||||| |||||| | ||||| | |||||||||| |
|
|
| T |
41570547 |
ggatctttcatattgtctattcaaagggccaattcctctttctttctctaacctcaca |
41570604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 28 - 377
Target Start/End: Original strand, 25521449 - 25521804
Alignment:
| Q |
28 |
aaaagaagccttctttgtttaccaagtattcaagaactagatatgtcatataatga---acttcaaggccaacttccagaattaagttgcagcacttctc |
124 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| ||||| || || |||||||||| |
|
|
| T |
25521449 |
aaaaggagcattctttgtttaccaagtattcaagaaatagatatgtcatttaatgatgaacttcaaggccaacttccggaattgagctgtagcacttctc |
25521548 |
T |
|
| Q |
125 |
ttagaatcttgcatctgttaaattgtcaattccaagggaaaattccaa---tgtctttttataacctcacacatcttacatctttaacactatcaggaaa |
221 |
Q |
| |
|
||||||| ||| || ||| | |||| |||| ||||| ||||||| | ||||||||| |||||| ||| ||||||| ||| |||| || ||| || |
|
|
| T |
25521549 |
ttagaatattggatttgtcagcttgtggattcgaaggggaaattcctactatgtctttttctaaccttacatatcttacctctctaactctctcatataa |
25521648 |
T |
|
| Q |
222 |
caacctaaacggttcaatctcattctcacttttaacacttccacgtctaacttacttggatctcagattgaacgaactcagtggttcaattccaaatgca |
321 |
Q |
| |
|
| |||||||||| |||||| ||| |||||| ||| ||||||||||||||||||||| ||||| |||| |||||| |||| ||||||||||||| |
|
|
| T |
25521649 |
ctacctaaacgggtcaatcccatcatcacttataaaacttccacgtctaacttacttagatctttatacgaacaaactcaatggtcgaattccaaatgca |
25521748 |
T |
|
| Q |
322 |
tttcaaatttcaaacaattttcaagaattagttttgagttataacaatattgaagg |
377 |
Q |
| |
|
||||| | |||||||| ||||||| ||||| ||| ||||||||||| ||||||| |
|
|
| T |
25521749 |
tttcagacatcaaacaaatttcaagtattagattttagttataacaaatttgaagg |
25521804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University