View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_33 (Length: 402)
Name: NF7737_low_33
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 161 - 386
Target Start/End: Original strand, 29336630 - 29336856
Alignment:
| Q |
161 |
taatagtatcttcatagccaaatgatttgacttaagtagttaataattttcaataacagtctaatcaatccggagtaaccgaattcaaaccatggcggta |
260 |
Q |
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| T |
29336630 |
taatagtatcttcatagccaagtgatttgacttaagtagttaataattttcaataacggtctaatcaacccggagtagccgaattcaaaccatggcggta |
29336729 |
T |
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| Q |
261 |
acaaccattggtcaggcttaacttaaattccgatcgaagtggggattatcaggactcgttcctctgagaacgagaaggttaagact-nnnnnnnngaata |
359 |
Q |
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| T |
29336730 |
acaaccattggtcaggcttaacttaaatttcgatcaaactggggattatcaggactcgttcctctgagaacgagaaggttaagactaaaaaaaaagaata |
29336829 |
T |
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| Q |
360 |
ttgcatgcacatacatgttcagtttct |
386 |
Q |
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| T |
29336830 |
ttgcatgcacatacatgttcagtttct |
29336856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 29336484 - 29336597
Alignment:
| Q |
15 |
atgaatctctagtataaatgnnnnnnnntatcttaaattattgaattccaagaactaaataacttgtgagactgatggtagataaagtgaattagctaac |
114 |
Q |
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| T |
29336484 |
atgaatctctagtataaatgaaaaaaaatatcttaaattattgaattccaagaactaaataacttgtgagattgatggtagataaagtgagttagctaac |
29336583 |
T |
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| Q |
115 |
aaccatgacagtac |
128 |
Q |
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| T |
29336584 |
aaccatgacagtac |
29336597 |
T |
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