View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_35 (Length: 368)
Name: NF7737_low_35
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 334
Target Start/End: Original strand, 46404878 - 46405197
Alignment:
| Q |
15 |
cttttctcttggcccttctaaagatgcaaatttctttgtgaacacagcacaataattattagcatgtaatcagaaatgatttgttcgtccaatacaactg |
114 |
Q |
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| T |
46404878 |
cttttctcttggcccttctaaagatgcaaatttctttgtgaacacagcacaataattattagcatgtaatcagaaatgatttgttcgtccaatacaactg |
46404977 |
T |
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| Q |
115 |
tgattgtatgctccagcttgtaagtatacaaacgtcccacatgggaattattgggtgcacaaattcccttctcctttaagcatgttataataatacacat |
214 |
Q |
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| T |
46404978 |
tgattgtatgctccagcttgtaagtatacaaacgtcccacatgggaattattgggtgcacaaattcccttctcctttaagcatgttataataatacacat |
46405077 |
T |
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| Q |
215 |
ttatcttttaatgcaatgtctaggatatatgtgggggcatttacatgtgctatcgtgtctggtccacattttgcttggtacctatgattgggctcgtcat |
314 |
Q |
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| T |
46405078 |
ttatcttttaatgcaatgtctaggatatatgtgggggcatttacatgtgctatcgtgtctagtccacattttgcttggtacctatgattgggctcgtcat |
46405177 |
T |
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| Q |
315 |
tcgtgtcttttgttggactt |
334 |
Q |
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| T |
46405178 |
tcgtgtcttttgttggactt |
46405197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 23972457 - 23972532
Alignment:
| Q |
15 |
cttttctcttggcccttctaaagatgcaaatttctttgtgaacacagcacaataattattagcatgtaatcagaaa |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
23972457 |
cttttctcttggcccttctaaagatgcaaatttctttgtgaacacaacacaataattagtagcatgtaatcagaaa |
23972532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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