View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_36 (Length: 367)
Name: NF7737_low_36
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 348
Target Start/End: Complemental strand, 40284779 - 40284452
Alignment:
| Q |
20 |
gctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacaactccaaccaaacaaaaccttccttccataga |
119 |
Q |
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| T |
40284779 |
gctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacaactccaaccaaacaaatccttccttccataga |
40284680 |
T |
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| Q |
120 |
gtactacaaattcattatattttctgtgcatcccttttgtttttagaatttgtttgtttggtttgatcttgaattcttgatctggatcagtatctctgga |
219 |
Q |
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| T |
40284679 |
gtactacaaattcattatattttctgtgcatcccttttgtttttagaatttgtttgtttggtttgatc-tgaattcttgatctggatcagtatctctgga |
40284581 |
T |
|
| Q |
220 |
cacttgatatttgttaggttttacttttctttttgataaattctttcatgcgtgctcgtgtccatttttattttaatgaacattgttactttgattaata |
319 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40284580 |
cacttgatatgtgttaggttttacttttctttttgatcaattctttcatgcgtgctcgtgtccatttttattttaatgaacattgttactttgattaata |
40284481 |
T |
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| Q |
320 |
tagtacatctctcagtcttggtagttgat |
348 |
Q |
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| T |
40284480 |
tagtacatctctcagtcttagtagttgat |
40284452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 40279818 - 40279707
Alignment:
| Q |
20 |
gctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacaactccaaccaaacaaaaccttccttccataga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
40279818 |
gctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacagctccaaccaaacacgcccttccttccataga |
40279719 |
T |
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| Q |
120 |
gtactacaaatt |
131 |
Q |
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|||||||||||| |
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| T |
40279718 |
gtactacaaatt |
40279707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 40458532 - 40458643
Alignment:
| Q |
20 |
gctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacaactccaaccaaacaaaaccttccttccataga |
119 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
40458532 |
gctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacagctccaaccaaacacgcccttccttccataga |
40458631 |
T |
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| Q |
120 |
gtactacaaatt |
131 |
Q |
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|||||||||||| |
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| T |
40458632 |
gtactacaaatt |
40458643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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