View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_41 (Length: 351)
Name: NF7737_low_41
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_41 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 39090274 - 39090610
Alignment:
| Q |
18 |
ggactggtttacttcttcctggacatcaacaagaccttgtttcaaaggtagcggctgcctcgagaggcccaaccattttggtcttaatgtctggtggtcc |
117 |
Q |
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| T |
39090274 |
ggactggtttacttcttcctggacatcaacaagaccttgtttcaaaggtagcggctgcctcgagaggcccaaccattttggtcttaatgtctggtgggcc |
39090373 |
T |
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| Q |
118 |
tatagatataacttttgcaaagaatgatcctcgaattataggcatcttgtgggctggttatcctggtcaagccggtggtgctgccattgcggatatattg |
217 |
Q |
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| T |
39090374 |
tatagatataacttttgcaaagaatgatcctcgaattatgggcattttgtgggctggttatcctggtcaagccggtggtgctgccattgcggatatattg |
39090473 |
T |
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| Q |
218 |
tttggaaccgctaacccaggtttgtaatgaatctattctttttaagggag---cttttcacctacgattcttaaaaatcgttccagtctggattcaccca |
314 |
Q |
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| T |
39090474 |
tttggaaccactaacccaggtttgtaatgaatctatcctttttaagggagcttcttttcacctacgattcttaaaaatcgttccagtccggatttaccca |
39090573 |
T |
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| Q |
315 |
actgaacacaagaaaaatcattatcttatatgtcttt |
351 |
Q |
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| T |
39090574 |
actggacacaagaaaaaacattatcttatatgtcttt |
39090610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 44715128 - 44714921
Alignment:
| Q |
35 |
cctggacatcaacaagaccttgtttcaaaggtagcggctgcctcgagaggcccaaccattttggtcttaatgtctggtggtcctatagatataacttttg |
134 |
Q |
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| T |
44715128 |
cctggacatcaacaagatcttgtttcaaaggtggcagctgcatcaaagggaccaactattttggttttgatgtctggtgggcctgtggacattacttttg |
44715029 |
T |
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| Q |
135 |
caaagaatgatcctcgaattataggcatcttgtgggctggttatcctggtcaagccggtggtgctgccattgcggatatattgtttggaaccgctaaccc |
234 |
Q |
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| T |
44715028 |
caaagaatgaccccaaagttgctggcatattgtgggcgggttatccaggccaagctggtggtgctgcaattgctgacattttatttggaactgctagccc |
44714929 |
T |
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| Q |
235 |
aggtttgt |
242 |
Q |
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| T |
44714928 |
aggtttgt |
44714921 |
T |
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