View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_49 (Length: 303)
Name: NF7737_low_49
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 33554871 - 33555027
Alignment:
| Q |
1 |
tataactagctatagttgttgttgttgtttgctttgatttgaaacagaagaagagtagcttagcttctacttg-----ttctattctattctattctttt |
95 |
Q |
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| T |
33554871 |
tataactagctatagttgttgttgttgtttgctttgatttgaaacagaagaagagtagcttagcttctacttgttctattctattctattctattctttt |
33554970 |
T |
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| Q |
96 |
ctttactctctccacactcctccactcaacaaaactctttaaaaataaaacccacta |
152 |
Q |
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| T |
33554971 |
ctttactctctccacactcctccactcaacaaaactctttaaaaataaaacccacta |
33555027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 33555065 - 33555178
Alignment:
| Q |
181 |
tggcgtgtgaaaatggagaggaacacaccggtgagaaaaccacatacttcaactgcagatctacttgtttggtctgaaactccaatcaatgattctccag |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33555065 |
tggcgtgtgaaaatggagaggaacacaccggtgagaaaaccacacacttcaactgcagatctacttgtttggtctgaaactccaatcaatgattctccag |
33555164 |
T |
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| Q |
281 |
ctcctccttcttct |
294 |
Q |
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|||||||||||||| |
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| T |
33555165 |
ctcctccttcttct |
33555178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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