View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_52 (Length: 294)
Name: NF7737_low_52
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 205
Target Start/End: Complemental strand, 21354863 - 21354704
Alignment:
| Q |
46 |
ggagtcttccaaacaataggaataatgtctcggacacgcctatgataaggagagacaaacagattttccaaaataacaacatctatatttaaacaataac |
145 |
Q |
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| T |
21354863 |
ggagccttccaaacaactggtataatgtcacgaacccgcctatgtaaaggagaaacaaacaaattttccaaaattacaacatccgaaaataaacagtaac |
21354764 |
T |
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| Q |
146 |
ctttggagaggcctcccgacaatgcaatcaatgatgaaatctttgccaacgtcgcatgca |
205 |
Q |
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| T |
21354763 |
ctttggaaatgcctcccgacatagcaatcagcgaagaaatctttgccaatgtcgcatgca |
21354704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 24307717 - 24307788
Alignment:
| Q |
52 |
ttccaaacaataggaataatgtctcggacacgcctatgataaggagagacaaacagattttccaaaataaca |
123 |
Q |
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| T |
24307717 |
ttccaaacaaccggaataatgtcccagacacgcctatgaagagggggaacaaacagattttccaatataaca |
24307788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 25110779 - 25110846
Alignment:
| Q |
1 |
tgcctaaccgacccgtccgtattagcctttatccaagggttggtcggagtcttccaaacaataggaat |
68 |
Q |
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| T |
25110779 |
tgcctaaccgacccgtccgtattagcctttatccaagggttagttggaaccttccaaacaacaggaat |
25110846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 25169871 - 25169938
Alignment:
| Q |
1 |
tgcctaaccgacccgtccgtattagcctttatccaagggttggtcggagtcttccaaacaataggaat |
68 |
Q |
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| T |
25169871 |
tgcctaaccgacccgtccgtattagcctttatccaagggttagttggaaccttccaaacaacaggaat |
25169938 |
T |
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