View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_56 (Length: 279)
Name: NF7737_low_56
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 11461906 - 11462169
Alignment:
| Q |
1 |
gatcaagaacttaattgcttttaattgattattattgctactgatg-cagatcaacatgaggtttttatctcaagattggatgctttcatgggcaatctt |
99 |
Q |
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| T |
11461906 |
gatcaagaacttaattgcttttaattgattattattgctactgattacagatcaacatgaggtttttatctcaagattggatgctttcatgggcaatctt |
11462005 |
T |
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| Q |
100 |
agtactagtgttggtgtcatgcacaccatgcttatcagctactaacagaaataccaaaaacaatgttaaatcagctgtttttatgtcacctaagattgaa |
199 |
Q |
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| T |
11462006 |
agtactagtgttggtgtcatgcacaccatgcttatcagctactaatagaaataccaaaaacaatgttaaatcagctgtttttatgtcacctaagattgaa |
11462105 |
T |
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| Q |
200 |
ttaagtccaggatcaatttcaaacaaattctattatgatgttgaatttccaaggggtcatattg |
263 |
Q |
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| T |
11462106 |
ttaagtccaggatcaatttcaaacaaattctattatgatgttgaatttccaaggggtcatattg |
11462169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 262
Target Start/End: Original strand, 11472139 - 11472352
Alignment:
| Q |
49 |
gatcaacatgaggtttttatctcaagattggatgctttcatgggcaatcttagtactagtgttggtgtcatgcacaccatgcttatcagctactaacaga |
148 |
Q |
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| T |
11472139 |
gatcaacacgaggtttgtgtcacaaaattggaacctttcatgggcaatcctagcactagtgttattgtcaagcacaccattctcatcagctacttttagg |
11472238 |
T |
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| Q |
149 |
aataccaaaaacaatgttaaatcagctgtttttatgtcacctaagattgaattaagtccaggatcaatttcaaacaaattctattatgatgttgaatttc |
248 |
Q |
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| T |
11472239 |
aagacaaaaaaatatatccaaacacaagtttttttctctcctaagattgaactaagtccaggatctgtttcaaataaattttattatgatgctgattttc |
11472338 |
T |
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| Q |
249 |
caaggggtcatatt |
262 |
Q |
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| T |
11472339 |
caagaggtcatatt |
11472352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 11478673 - 11478744
Alignment:
| Q |
191 |
aagattgaattaagtccaggatcaatttcaaacaaattctattatgatgttgaatttccaaggggtcatatt |
262 |
Q |
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| T |
11478673 |
aagattgaactaagtccaggatctgtttcaaataaaatatattatgatgttgattttccaagtggtcatatt |
11478744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 21546364 - 21546449
Alignment:
| Q |
177 |
tttttatgtcacctaagattgaattaagtccaggatcaatttcaaacaaattctattatgatgttgaatttccaaggggtcatatt |
262 |
Q |
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| T |
21546364 |
tttttatgtctcccaagattgaactaaatccaggatttgtttcaaataaagtgtattatgatgttgagtttccaagaggtcatatt |
21546449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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