View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_low_58 (Length: 278)

Name: NF7737_low_58
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_low_58
NF7737_low_58
[»] chr5 (3 HSPs)
chr5 (1-269)||(25110406-25110674)
chr5 (1-269)||(25169498-25169766)
chr5 (58-230)||(33852247-33852419)
[»] chr6 (1 HSPs)
chr6 (101-269)||(4790412-4790580)
[»] scaffold0196 (1 HSPs)
scaffold0196 (52-232)||(31491-31671)
[»] chr4 (1 HSPs)
chr4 (52-232)||(10988173-10988353)
[»] chr1 (1 HSPs)
chr1 (42-268)||(21355025-21355251)
[»] scaffold0001 (1 HSPs)
scaffold0001 (52-232)||(198655-198835)
[»] chr8 (4 HSPs)
chr8 (52-232)||(21407501-21407681)
chr8 (52-232)||(21801993-21802173)
chr8 (54-232)||(27916395-27916573)
chr8 (54-232)||(27962814-27962992)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 25110674 - 25110406
Alignment:
Q  1 tgggcctccttctggccatagaatatgcggtcatcaacaggtggtctcatgtatggcttgaaactgattctattagtgcggttcacgccttccataaacc 100  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  25110674 tgggcctcctactggccatagaatatgcggtcatcaacatgtggtctcatttatggcttgaaagtgattctattagtgcggttcaagccttccataaacc 25110575  T
Q  101 atctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt 200  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25110574 atctcttattcctatttgtcttcggaagaggtggcataattgctctcaaaataatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt 25110475  T
Q  201 gctgatggccttgctgctttgggtcatgatgttcacgacacggtttggttcacgttgttgccttcatct 269  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25110474 gctgatggccttgctgctttgggacatgatgttcaagacacggtttggttcacgttgttgccttcatct 25110406  T

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Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 25169766 - 25169498
Alignment:
Q  1 tgggcctccttctggccatagaatatgcggtcatcaacaggtggtctcatgtatggcttgaaactgattctattagtgcggttcacgccttccataaacc 100  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  25169766 tgggcctcctactggccatagaatatgcggtcatcaacatgtggtctcatttatggcttgaaagtgattctattagtgcggttcaagccttccataaacc 25169667  T
Q  101 atctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt 200  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25169666 atctcttattcctatttgtcttcggaagaggtggcataattgctctcaaaataatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt 25169567  T
Q  201 gctgatggccttgctgctttgggtcatgatgttcacgacacggtttggttcacgttgttgccttcatct 269  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25169566 gctgatggccttgctgctttgggacatgatgttcaagacacggtttggttcacgttgttgccttcatct 25169498  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 230
Target Start/End: Complemental strand, 33852419 - 33852247
Alignment:
Q  58 ttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaattt 157  Q
    |||||| |||||||  | |||| ||||| || ||||||||||||||||||||||||||| ||||||| |||  |||||| || ||| |||| | |   ||    
T  33852419 ttgaaagtgattcttcttgtgcagttcaagctttccataaaccatctcttattcctatttgtcttcggaacgagtggcacaactgcactcataatggctt 33852320  T
Q  158 gtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgat 230  Q
    |||| | ||||| || || |||||||| ||||| ||||||||| |||| | |||||  |||||||| ||||||    
T  33852319 gtttatgatttgttctcacatcttccgagaagggaatgtttgtactgacgaccttgtagctttgggacatgat 33852247  T

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Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 101 - 269
Target Start/End: Complemental strand, 4790580 - 4790412
Alignment:
Q  101 atctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt 200  Q
    ||||||||||||||||| |||||| |||||||||||||| || |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4790580 atctcttattcctattcttcttcggaacaggtggcataactgttctcaaaaaaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt 4790481  T
Q  201 gctgatggccttgctgctttgggtcatgatgttcacgacacggtttggttcacgttgttgccttcatct 269  Q
    | ||||||| |||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  4790480 gttgatggcgttgcagctttgggacatgatattcaagacacggtttggttcacgttgttgccttcatct 4790412  T

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Target: scaffold0196 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 232
Target Start/End: Complemental strand, 31671 - 31491
Alignment:
Q  52 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 151  Q
    |||||||||||| |||||||  |||||||||||| || |||||||||||||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  31671 tatggcttgaaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaa 31572  T
Q  152 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 232  Q
       | | ||| | |||||||| || |||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  31571 gggtctctttattatttgctcccacatcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 31491  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 232
Target Start/End: Complemental strand, 10988353 - 10988173
Alignment:
Q  52 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 151  Q
    |||||||||||| |||||||  |||||||||||| || |||||||||||||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  10988353 tatggcttgaaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaa 10988254  T
Q  152 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 232  Q
       | | ||| | |||||||| || |||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  10988253 gggtctctttattatttgctcccacatcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 10988173  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 42 - 268
Target Start/End: Original strand, 21355025 - 21355251
Alignment:
Q  42 tggtctcatgtatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataatt 141  Q
    ||||||||| ||||||||||||  || |||  |||||||||||| || |||||||||||||||||||||||| || ||||||| ||| | || || || |    
T  21355025 tggtctcatttatggcttgaaagcgactcttctagtgcggttcaggctttccataaaccatctcttattcctgtttgtcttcggaaccgatgacacaact 21355124  T
Q  142 gctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgttcacgacac 241  Q
    |  | || | |||| ||||||||||||| || ||||| |||||  |||||||||| |||||| |||| ||||| ||  |||| |  ||| |||| | |||    
T  21355125 gtacacataataatctgtttctcatttgttctcatatattccggaaaggaaatgtctgtgcttatggacttgcagccatggggcgcgatattcaaggcac 21355224  T
Q  242 ggtttggttcacgttgttgccttcatc 268  Q
    ||| |||||||| ||||||||| ||||    
T  21355225 ggtctggttcactttgttgcctccatc 21355251  T

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Target: scaffold0001 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 232
Target Start/End: Complemental strand, 198835 - 198655
Alignment:
Q  52 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 151  Q
    |||||||||||| |||||||  ||||||||| || || |||||| ||||||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  198835 tatggcttgaaagtgattcttctagtgcggtacaagctttccatcaaccatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa 198736  T
Q  152 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 232  Q
    |  | | ||| | |||||||| || |||||||| ||||| ||| || | || |||||||| || |||||||| ||||||||    
T  198735 tggtctctttattatttgctcccacatcttccgagaaggcaatattagcgcggatggcctcgccgctttgggacatgatgt 198655  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 232
Target Start/End: Complemental strand, 21407681 - 21407501
Alignment:
Q  52 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 151  Q
    |||||||||||| |||||||  ||||||||| || || |||||||||| ||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  21407681 tatggcttgaaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa 21407582  T
Q  152 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 232  Q
    |  | | ||| | |||||||| || |||||| | ||||| |||||||| || |||||||| ||  ||||||| ||||||||    
T  21407581 tggtctctttattatttgctcccacatcttcagagaagggaatgtttgcgcggatggcctcgccactttgggacatgatgt 21407501  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 232
Target Start/End: Complemental strand, 21802173 - 21801993
Alignment:
Q  52 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 151  Q
    |||||||||||| |||||||  ||||||||| || || |||||||||| ||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  21802173 tatggcttgaaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa 21802074  T
Q  152 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 232  Q
    |  | | ||| | |||||||| || |||||| | ||||| |||||||| || |||||||| ||  ||||||| ||||||||    
T  21802073 tggtctctttattatttgctcccacatcttcagagaagggaatgtttgcgcggatggcctcgccactttgggacatgatgt 21801993  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 27916395 - 27916573
Alignment:
Q  54 tggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaacta 153  Q
    ||||||||||  ||||||  ||||||||| || || ||||||||||||||||||||||   || ||||||||||| | |||||||||||  |||| | |     
T  27916395 tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattcaggttggtcttcgcaaccgttggcataattgtactcacaatg 27916494  T
Q  154 atttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 232  Q
     | | ||| | |||||||  ||  ||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  27916495 gtctctttattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 27916573  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 27962814 - 27962992
Alignment:
Q  54 tggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaacta 153  Q
    ||||||||||  ||||||  ||||||||| || || ||||||||||||||||||||||   || ||||||||||| | |||||||||||  |||| | |     
T  27962814 tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatg 27962913  T
Q  154 atttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 232  Q
     | | ||| | |||||||  ||  ||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  27962914 gtctctttattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 27962992  T

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