View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_59 (Length: 260)
Name: NF7737_low_59
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 43689592 - 43689385
Alignment:
| Q |
16 |
atctttgtacagaagcaagagagctaagatcaatctccaatagaataacctcagcataaggactctcctcttgaattttttctttcactttcatagcctt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43689592 |
atctttgtacagaagcaagagagctaagatcaatctccaatagaataacctcagcataaggactctcctcttggattttttctttcactttcatagcctt |
43689493 |
T |
|
| Q |
116 |
tttcatgtctctggcaccaaccacaactcttactcctctttttgccaacaccctagccgtttcagctccaataccagaagtagcaccttcaattgaaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43689492 |
tttcatgtctctggcaccaaccacaactcttactcctctttttgccaacaccctagccgtttcagctccaataccagaagtagcaccttcaattgaaaat |
43689393 |
T |
|
| Q |
216 |
tccaaaac |
223 |
Q |
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|||||||| |
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| T |
43689392 |
tccaaaac |
43689385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 34748080 - 34747891
Alignment:
| Q |
16 |
atctttgtacagaagcaagagagctaagatcaatctccaatagaataacctcagcataaggactctcctcttgaattttttctttcactttcatagcctt |
115 |
Q |
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|||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |||||||| | ||| || || ||| |||||||||| ||||| |
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| T |
34748080 |
atctttgtacagaacaaaaagagctaagatcaatctccaacagaataacctcagcatttggactctctttttgtatattgtctctcactttcattgcctt |
34747981 |
T |
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| Q |
116 |
tttcatgtctctggcaccaaccacaactcttactcctctttttgccaacaccctagccgtttcagctccaataccagaagtagcaccttc |
205 |
Q |
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| T |
34747980 |
cttcaagtcccttgcaccaatcacaattctcactcctctctttgctaacactctagctgtttcagctccaataccagaagttccaccttc |
34747891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 7970767 - 7970946
Alignment:
| Q |
16 |
atctttgtacagaagcaagagagctaagatcaatctccaatagaataacctcagcataaggactctcctcttgaattttttctttcactttcatagcctt |
115 |
Q |
| |
|
|||||| |||||||| || ||||||||| |||| ||||| |||||||||||||||| |||||||| | ||| || || ||| ||||||||| ||||| |
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| T |
7970767 |
atctttatacagaagaaaaggagctaagaccaatttccaacagaataacctcagcatttggactctctttttgtatattgtct--cactttcattgcctt |
7970864 |
T |
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| Q |
116 |
tttcatgtctctggcaccaaccacaactcttactcctctttttgccaacaccctagccgtttcagctccaataccagaagta |
197 |
Q |
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|||| ||| || ||||||| ||||| ||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
7970865 |
cttcaagtcccttgcaccaatcacaattctcactcctctctttgctaacactctagctgtttcagctccaataccagaagta |
7970946 |
T |
|
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