View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_low_6 (Length: 601)

Name: NF7737_low_6
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_low_6
NF7737_low_6
[»] chr7 (5 HSPs)
chr7 (2-469)||(4561247-4561725)
chr7 (509-585)||(4561772-4561848)
chr7 (10-54)||(1101273-1101317)
chr7 (10-65)||(42648062-42648117)
chr7 (518-586)||(1101734-1101801)
[»] chr2 (5 HSPs)
chr2 (2-469)||(14953395-14953873)
chr2 (509-585)||(14953277-14953353)
chr2 (519-586)||(40833270-40833336)
chr2 (10-65)||(5709248-5709303)
chr2 (513-586)||(14002214-14002287)
[»] chr8 (2 HSPs)
chr8 (2-469)||(5370525-5371003)
chr8 (509-585)||(5370406-5370482)
[»] chr3 (2 HSPs)
chr3 (515-586)||(46697191-46697262)
chr3 (327-364)||(46697010-46697047)
[»] chr6 (1 HSPs)
chr6 (521-586)||(23885849-23885914)
[»] chr4 (2 HSPs)
chr4 (518-586)||(56398469-56398536)
chr4 (10-63)||(16834023-16834076)
[»] chr1 (1 HSPs)
chr1 (513-586)||(6284577-6284650)
[»] chr5 (1 HSPs)
chr5 (546-578)||(37606037-37606069)


Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 2 - 469
Target Start/End: Original strand, 4561247 - 4561725
Alignment:
Q  2 aaatccatacacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaatgaagtggcaattttg 101  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561247 aaatccatacacaaatacgacagcagtggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaatgaagtggcaattttg 4561346  T
Q  102 tcattttcccttttctttctcactccatgtccgtttccctct-----------tctttctctctcgtcctttgactttggtggtgacagtagaagtggtt 190  Q
    ||||||||||||| ||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||| ||||||||||    
T  4561347 tcattttccctttcctttctcactccatgtccgtttccctcttctctcactcttctttctctctcgtcctttgactttggtggtgacagcagaagtggtt 4561446  T
Q  191 ggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagttggtgatcggaatctgagagt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  4561447 ggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagtcggtgatctgaatctgagagt 4561546  T
Q  291 tgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagttgtaggtgagagc 390  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4561547 tgcaggtcgtttgcagaagtggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagtggtaggtgagagc 4561646  T
Q  391 ttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 469  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561647 ttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 4561725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 509 - 585
Target Start/End: Original strand, 4561772 - 4561848
Alignment:
Q  509 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4561772 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 4561848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 1101273 - 1101317
Alignment:
Q  10 acacaaatacgacagcaatggcaatttcgtaattctaattaaagt 54  Q
    ||||||||||||||||||||||||||| |||||| | ||||||||    
T  1101273 acacaaatacgacagcaatggcaattttgtaattatcattaaagt 1101317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 42648117 - 42648062
Alignment:
Q  10 acacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggacaaa 65  Q
    |||||||||||||| |||||||| ||| |||||||||||| ||||  |||||||||    
T  42648117 acacaaatacgacatcaatggcatttttgtaattctaattgaagtgcaaggacaaa 42648062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 586
Target Start/End: Original strand, 1101734 - 1101801
Alignment:
Q  518 tgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 586  Q
    |||| |||||| |||||| |||||| |||||||||| || ||||  |||||||||||||||||| ||||    
T  1101734 tgtacaaatactgtataa-tatacgatgaacagtgtatgatgtctaatttgtgtttgtattttggtgtc 1101801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 2 - 469
Target Start/End: Complemental strand, 14953873 - 14953395
Alignment:
Q  2 aaatccatacacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaatgaagtggcaattttg 101  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14953873 aaatccatacacaaatacgacagcagtggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaacgaagtggcaattttg 14953774  T
Q  102 tcattttcccttttctttctcactccatgtccgtttccctcttct-----------ttctctctcgtcctttgactttggtggtgacagtagaagtggtt 190  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||           ||||||||||||||||||||||||||||||||| ||||||||||    
T  14953773 tcattttccctttcctttctcacttcatgtccgtttccctcttctctcactcttctttctctctcgtcctttgactttggtggtgacagcagaagtggtt 14953674  T
Q  191 ggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagttggtgatcggaatctgagagt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  14953673 ggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagtcagtgatcggaatctgagagt 14953574  T
Q  291 tgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagttgtaggtgagagc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14953573 tgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagtggtaggtgagagc 14953474  T
Q  391 ttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 469  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14953473 ttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 14953395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 509 - 585
Target Start/End: Complemental strand, 14953353 - 14953277
Alignment:
Q  509 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14953353 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 14953277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 519 - 586
Target Start/End: Original strand, 40833270 - 40833336
Alignment:
Q  519 gtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 586  Q
    |||||||||||||||||| ||||||| |||| | |||||||||| |||||| |||||| |||||||||    
T  40833270 gtataaataccgtataaacatacggtcaacaatatttggtgtcaaatttgt-tttgtaatttgatgtc 40833336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 5709248 - 5709303
Alignment:
Q  10 acacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggacaaa 65  Q
    |||||||||||||| || ||||| |||||||||||||||| ||||  |||||||||    
T  5709248 acacaaatacgacatcagtggcattttcgtaattctaattgaagtgcaaggacaaa 5709303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 586
Target Start/End: Original strand, 14002214 - 14002287
Alignment:
Q  513 actgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 586  Q
    |||| ||||| |||||||||||||||||  | ||||  |||||| ||||  |||||| ||||||||||||||||    
T  14002214 actggtgtatcaataccgtataaatatattgcgaactttgtttgatgtctaatttgtatttgtattttgatgtc 14002287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 2 - 469
Target Start/End: Complemental strand, 5371003 - 5370525
Alignment:
Q  2 aaatccatacacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaatgaagtggcaattttg 101  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5371003 aaatccatacacaaatacgacagcagtggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaaagaagtggcaattttg 5370904  T
Q  102 tcattttcccttttctttctcactccatgtccgtttccctcttct-----------ttctctctcgtcctttgactttggtggtgacagtagaagtggtt 190  Q
    ||||||||||||| |||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||| ||||||||||    
T  5370903 tcattttccctttcctttctcactccatgtccgtttccctcttctctcactcttctttctctctcgtcctttgactttggtggtgacagcagaagtggtt 5370804  T
Q  191 ggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagttggtgatcggaatctgagagt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  5370803 ggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagtcagtgatcagaatctgagagt 5370704  T
Q  291 tgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagttgtaggtgagagc 390  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5370703 tgcaggtcgtttgcagaagaggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagtggtaggtgagagc 5370604  T
Q  391 ttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 469  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5370603 ttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 5370525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 509 - 585
Target Start/End: Complemental strand, 5370482 - 5370406
Alignment:
Q  509 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 585  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5370482 gaacactgatatataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 5370406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 515 - 586
Target Start/End: Original strand, 46697191 - 46697262
Alignment:
Q  515 tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 586  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46697191 tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgtc 46697262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 46697010 - 46697047
Alignment:
Q  327 ttgttggtggtggtcagatctaagctgatcggagaaga 364  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  46697010 ttgttggtggtggtcagatctgagctgatcggagaaga 46697047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 521 - 586
Target Start/End: Complemental strand, 23885914 - 23885849
Alignment:
Q  521 ataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 586  Q
    |||||||| |||||||||||| || ||||||||||| ||||  |||||||||||||||||||||||    
T  23885914 ataaatactgtataaatatactgtaaacagtgtttgatgtctaatttgtgtttgtattttgatgtc 23885849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 518 - 586
Target Start/End: Original strand, 56398469 - 56398536
Alignment:
Q  518 tgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 586  Q
    |||| |||||| |||||| |||||| ||||||||||||| ||||  |||||||||||||||||||||||    
T  56398469 tgtacaaatactgtataa-tatacgatgaacagtgtttgatgtctaatttgtgtttgtattttgatgtc 56398536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 16834023 - 16834076
Alignment:
Q  10 acacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggaca 63  Q
    |||||||||||||| || ||||| |||||||||||||||| ||||  |||||||    
T  16834023 acacaaatacgacatcagtggcattttcgtaattctaattgaagtgcaaggaca 16834076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 586
Target Start/End: Complemental strand, 6284650 - 6284577
Alignment:
Q  513 actgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 586  Q
    |||||| ||| ||||||||||||| ||||  |||| | |||||| ||||  |||||||||||||||||||||||    
T  6284650 actgatatatgaataccgtataaagatactatgaataatgtttgatgtctaatttgtgtttgtattttgatgtc 6284577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 546 - 578
Target Start/End: Original strand, 37606037 - 37606069
Alignment:
Q  546 aacagtgtttggtgtcatatttgtgtttgtatt 578  Q
    |||||||| ||||||||||||||||||||||||    
T  37606037 aacagtgtatggtgtcatatttgtgtttgtatt 37606069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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