View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_68 (Length: 245)
Name: NF7737_low_68
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 4140895 - 4140681
Alignment:
| Q |
9 |
atcgagtttggtgttccgaaagaagtccacaaagtcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaata |
108 |
Q |
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| T |
4140895 |
atcgagtttggtgctccgaaagaagtccacaaagtcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaata |
4140796 |
T |
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| Q |
109 |
agttggtcagtttgcaagaatagaaacacatgtttaaaaatggggaatgcaacggatatacatgtttaaacaaataatagataacttcactattaaagtc |
208 |
Q |
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| T |
4140795 |
agttggtcagtttgcaagaatagaaatacatgtttaaaaatggggaatgcaacggatatacatgtttaaacaaataatagataacttcactattaaagtc |
4140696 |
T |
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| Q |
209 |
acggaggtaccaact |
223 |
Q |
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| T |
4140695 |
acggaggtaccaact |
4140681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 4129187 - 4129095
Alignment:
| Q |
16 |
ttggtgttccgaaagaagtccacaaagtcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaata |
108 |
Q |
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| T |
4129187 |
ttggtgctccgaaataaatcaacgaactcaccagaaacaatcttttccatcaacacttccaaagaagctgcaagaagtgcttctcccacaata |
4129095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 13932617 - 13932522
Alignment:
| Q |
13 |
agtttggtgttccgaaagaagtccacaaagtcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaata |
108 |
Q |
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| T |
13932617 |
agtttggtactccgaatgaaatccacgaaatcttcagcaacaatttttttcaacaacagctccaaagaagctgaaagaagtgcttctaccacaata |
13932522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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