View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_69 (Length: 242)
Name: NF7737_low_69
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 37136331 - 37136117
Alignment:
| Q |
9 |
ttggtgttgattaggccaacaatgatgatgaaggcaatgacaactaaatgaaagatagttgcaattttgttgaagagagaagagattctggtgctcaaga |
108 |
Q |
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| T |
37136331 |
ttggcgttgattaggccaacaatgatgatgaaggcaatgacaactaaatgaaagattgttgcaattttgttgaagagagaagagattctggtgctcaaga |
37136232 |
T |
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| Q |
109 |
ctgcaagagtggcgatggctatgagggctataacagcaatagggtcaagatgaccataatcagggctcatattttggactattatacgaaaatcgttagg |
208 |
Q |
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| T |
37136231 |
ctgcaagagtggcgatggctatgagggctataacagcaatagggtcaagatgaccataatcagggttcatattgtggaatattatacgaaaatcgttagg |
37136132 |
T |
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| Q |
209 |
atttttgttgcagag |
223 |
Q |
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| T |
37136131 |
atttttgttgcagag |
37136117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 37120021 - 37120136
Alignment:
| Q |
108 |
actgcaagagtggcgatggctatgagggctataacagcaatagggtcaagatgaccataatcagggctcatattttggactattatacgaaaatcgttag |
207 |
Q |
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| T |
37120021 |
actgcaagagctgtgatggctactagggctccaatagcaatagggtcaagatggccataatcaggattcatattgtgaactattatacgaaaatcatcag |
37120120 |
T |
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| Q |
208 |
gatttttgttgcagag |
223 |
Q |
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| T |
37120121 |
ggtttttgttgcagag |
37120136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 37111801 - 37111881
Alignment:
| Q |
143 |
agcaatagggtcaagatgaccataatcagggctcatattttggactattatacgaaaatcgttaggatttttgttgcagag |
223 |
Q |
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| T |
37111801 |
agcaatagggtcaagatggccatagtcagggttcatattgtgaactattatacgaaaatcatcagggtttttgttgcagag |
37111881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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