View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7737_low_71 (Length: 241)
Name: NF7737_low_71
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_71 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 54688135 - 54688358
Alignment:
| Q |
1 |
caggaaactcttttgggctgaattaacttggaaatggaaccccagctgtttgactttgactgtgtggtccctgatataaattgcaatattgtctgaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
54688135 |
caggaaactcttttgggctgaattagcttggaaatggaaccccagctgtttgactttgactgtgtggtccctgatataaattgcaatactgcctgaaatg |
54688234 |
T |
|
| Q |
101 |
tagatagggttgccacttcaacatcttgtaataagttaatcaaagccactgtttgatggtctttgtttgtagataagatgttgctatttttggcatttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54688235 |
tagatagggttgccacttcaacatcttgtaataagttaatcaaagccactgtttgatggtctttgtttgtagataagatgttgctatttttggcatttcc |
54688334 |
T |
|
| Q |
201 |
cttcaaatttaccaaggttttgga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
54688335 |
cttcaaatttaccaaggttttgga |
54688358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 54700085 - 54700303
Alignment:
| Q |
6 |
aactcttttgggctgaattaacttggaaatggaaccccagctgtttgactttgactgtgtggtccctgatataaattgcaatattgtctgaaatgtagat |
105 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
54700085 |
aactcttttcggctgaataagtttggaaatggaaccccagctgtttgattttgactgtgttgtccccgagataaattgcaatattgtctgaaatgtagat |
54700184 |
T |
|
| Q |
106 |
agggttgccacttcaacatcttgtaataagttaatcaaagccactgtttgatggtctttgtttgtagataagatgttgctatttttggcatttcccttca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
54700185 |
agggttgccacttcaacatcttgtaataagctaatcaaagccactgtttgatggtcattgtttgtagataagatgttgctatgtttggtatttcccttca |
54700284 |
T |
|
| Q |
206 |
aatttaccaaggttttgga |
224 |
Q |
| |
|
||||| |||||| |||||| |
|
|
| T |
54700285 |
aatttgccaaggctttgga |
54700303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 54692737 - 54692950
Alignment:
| Q |
16 |
ggctgaattaacttggaaatggaaccccagctgtttgactttgactgtgtggtccctgatataaattgcaatattgtctgaaatgtagatagggttgcca |
115 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||||||||||||||||| | ||||| || ||||||| |||| ||| |||||||||||| || |||| |
|
|
| T |
54692737 |
ggctgaattagcttggaaatggaaagccaagtgtttgactttgactgtgtgctacctgagatgaattgcagtattatctcaaatgtagatagtgtagcca |
54692836 |
T |
|
| Q |
116 |
cttcaacatcttgtaataagttaatcaaag-----ccactgtttgatggtctttgtttgtagataagatgttgctatttttggcatttcccttcaaattt |
210 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||| || ||||| | | |||||||||||| |
|
|
| T |
54692837 |
attcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatttggtagtgcccttcaaattt |
54692936 |
T |
|
| Q |
211 |
accaaggttttgga |
224 |
Q |
| |
|
||||| |||||| |
|
|
| T |
54692937 |
gtcaaggctttgga |
54692950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University