View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7737_low_74 (Length: 238)
Name: NF7737_low_74
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_74 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 39090863 - 39090673
Alignment:
| Q |
15 |
aaaatcaccaaagattattactaatttactacctccctccttttatataaaactcttgcaaaattttcaagaaactcacatgtcttattgttcatgatat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39090863 |
aaaatcaccaaagattattactaatttactacctccctccttttatataaaactcttgcaaaattttcaagaaactcacatatcttattgttcatgatat |
39090764 |
T |
|
| Q |
115 |
tcgtcaataatgattgcagatagcaataatgattaaaaattgagtctcacataatgtagnnnnnnngggcctagtatgggcattttgagagataagaaga |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
39090763 |
tcgtcaataat-------------------gattaaaaattgagtctcacataatgtagtttttttgggcctagtatgggcattttgagagataaaaaga |
39090683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University