View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7737_low_79 (Length: 227)

Name: NF7737_low_79
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7737_low_79
NF7737_low_79
[»] chr6 (2 HSPs)
chr6 (14-124)||(27169309-27169419)
chr6 (114-211)||(27169440-27169537)
[»] chr7 (11 HSPs)
chr7 (14-112)||(2567701-2567799)
chr7 (14-124)||(2592681-2592791)
chr7 (14-124)||(10302827-10302937)
chr7 (14-118)||(2572026-2572130)
chr7 (109-211)||(10298334-10298433)
chr7 (137-210)||(2592836-2592909)
chr7 (117-210)||(10302963-10303055)
chr7 (139-211)||(2588297-2588370)
chr7 (14-111)||(10298209-10298305)
chr7 (150-210)||(2572191-2572251)
chr7 (119-207)||(2567960-2568050)
[»] chr1 (3 HSPs)
chr1 (14-123)||(22225433-22225542)
chr1 (151-211)||(22221066-22221126)
chr1 (158-210)||(22229469-22229521)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 27169309 - 27169419
Alignment:
Q  14 gatgaatggttaattgtttatttggtagatttaatttattcctattgtatttaagggcgttaaattaaaaatcttaatcaaacacttgttttgagttttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27169309 gatgaatggttaattgtttatttggtagatttaatttattcctattgtatttaagggcgttaaattaaaaatcttaatcaaacacttgttttgagttttc 27169408  T
Q  114 attttgttcaa 124  Q
    ||||| |||||    
T  27169409 attttattcaa 27169419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 27169440 - 27169537
Alignment:
Q  114 attttgttcaacaatataaaaatgaaatttttaattatttatgacaaagttgtgtgaattgatttttaaaatgaacgaggattcatagaaatatatat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27169440 attttgttcaacaatataaaaatgaaatttttaattatttatgacaaagttgtgtgaattgatttttaaaatgaacgaggattcatagaaatatatat 27169537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 2567701 - 2567799
Alignment:
Q  14 gatgaatggttaattgtttatttggtagatttaatttattcctattgtatttaagggcgttaaattaaaaatcttaatcaaacacttgttttgagtttt 112  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||| |||||||||||||||||||    
T  2567701 gatgaatgattatttgtttatttggtagatttaatttattcctattgtatttaagggcgttaaattgcaaaccttaatccaacacttgttttgagtttt 2567799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 2592681 - 2592791
Alignment:
Q  14 gatgaatggttaattgtttatttggtagatttaatttattcctattgtatttaagggcgttaaattaaaaatcttaatcaaacacttgttttgagttttc 113  Q
    |||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||  ||| ||||||| ||||||||||||||| ||||    
T  2592681 gatgaatgattatttttttatttggtagatttaatttattccttttgtatttaagggcgttaaattgcaaaccttaatccaacacttgttttgagctttc 2592780  T
Q  114 attttgttcaa 124  Q
    ||||| |||||    
T  2592781 attttattcaa 2592791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 10302827 - 10302937
Alignment:
Q  14 gatgaatggttaattgtttatttggtagatttaatttattcctattgtatttaagggcgttaaattaaaaatcttaatcaaacacttgttttgagttttc 113  Q
    |||||||| ||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||  ||| ||||||| ||||||||||||||| |||     
T  10302827 gatgaatgattatttttttatttggtagatttgatttattccttttgtatttaagggcgttaaattgcaaaccttaatccaacacttgttttgagctttg 10302926  T
Q  114 attttgttcaa 124  Q
    ||||| |||||    
T  10302927 attttattcaa 10302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 2572026 - 2572130
Alignment:
Q  14 gatgaatggttaattgtttatttggtagatttaatttattcctattgtatttaagggcgttaaattaaaaatcttaatcaaacacttgttttgagttttc 113  Q
    |||||||| ||| || |||||||||||||||||||||||||   |||||||||| |||||||||||  ||| ||||||| ||||||||||||||| ||||    
T  2572026 gatgaatgattatttttttatttggtagatttaatttattcagtttgtatttaacggcgttaaattgcaaaccttaatccaacacttgttttgagctttc 2572125  T
Q  114 atttt 118  Q
    |||||    
T  2572126 atttt 2572130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 10298334 - 10298433
Alignment:
Q  109 ttttcattttgttcaacaatataaaaatgaaatttttaattatttatgacaaagttgtgtgaattgatttttaaaatgaacgaggattcatagaaatata 208  Q
    |||| ||||||||||| | |||||||||||  |||||   ||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||    
T  10298334 ttttaattttgttcaaaattataaaaatgattttttt---tatttatgacagaattgtgtgaattgatttttaaaatgaacgtggatttatagaaatata 10298430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 2592836 - 2592909
Alignment:
Q  137 gaaatttttaattatttatgacaaagttgtgtgaattgatttttaaaatgaacgaggattcatagaaatatata 210  Q
    |||||||||  ||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  2592836 gaaatttttttttatttatgccaaagttgtgttaattgatttttaaaatgaacgtggatttatagaaatatata 2592909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 10302963 - 10303055
Alignment:
Q  117 ttgttcaacaatataaaaatgaaatttttaattatttatgacaaagttgtgtgaattgatttttaaaatgaacgaggattcatagaaatatata 210  Q
    |||||| ||||||||||| ||||  ||||  ||||||||| ||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||    
T  10302963 ttgttcgacaatataaaa-tgaatattttttttatttatggcaaagttgtgttaattgatttttaaaaggaacgtggatttatagaaatatata 10303055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 2588297 - 2588370
Alignment:
Q  139 aatttttaattatttatgacaaagttgtgtgaattgatttttaaaatgaacgagga-ttcatagaaatatatat 211  Q
    |||||||  |||||||||| ||| |||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  2588297 aatttttttttatttatgaaaaaattgtgtgaattgatttttaaaatgaacgtggattttatagaaatatatat 2588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 10298209 - 10298305
Alignment:
Q  14 gatgaatggttaattgtttatttggtagatttaatttattcctattgtatttaagggcgttaaattaaaaatcttaatcaaacacttgttttgagttt 111  Q
    |||||||  ||| ||||||||||| ||||| |||||||||  | ||||||||||||||||||||||  ||| ||||||| | ||||||||||||||||    
T  10298209 gatgaataattatttgtttatttgttagatgtaatttatttgt-ttgtatttaagggcgttaaattgcaaaccttaatccatcacttgttttgagttt 10298305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 2572191 - 2572251
Alignment:
Q  150 atttatgacaaagttgtgtgaattgatttttaaaatgaacgaggattcatagaaatatata 210  Q
    ||||||| ||||||||||| ||||||||||| ||||||||| ||||| || ||||||||||    
T  2572191 atttatggcaaagttgtgttaattgattttttaaatgaacgtggatttatcgaaatatata 2572251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 2567960 - 2568050
Alignment:
Q  119 gttcaacaatataaaaatgaaat--ttttaattatttatgacaaagttgtgtgaattgatttttaaaatgaacgaggattcatagaaatat 207  Q
    |||||||| ||||||||||||||  ||||  |||||||||| ||  || | ||||||||||||||||| ||||| ||||| ||||||||||    
T  2567960 gttcaacattataaaaatgaaatatttttttttatttatgaaaattttttttgaattgatttttaaaacgaacgtggatttatagaaatat 2568050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 22225433 - 22225542
Alignment:
Q  14 gatgaatggttaattgtttatttggtagatttaatttattcctattgtatttaagggcgttaaattaaaaatcttaatcaaacacttgttttgagttttc 113  Q
    |||||||| ||| || ||||||||||||||||||||||||||| |||||||||||||| |||||||  ||| ||||||| |||||| |||||||| ||||    
T  22225433 gatgaatgattatttttttatttggtagatttaatttattccttttgtatttaagggcattaaattgcaaaccttaatccaacactcgttttgagctttc 22225532  T
Q  114 attttgttca 123  Q
    ||||| ||||    
T  22225533 attttattca 22225542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 22221066 - 22221126
Alignment:
Q  151 tttatgacaaagttgtgtgaattgatttttaaaatgaacgaggattcatagaaatatatat 211  Q
    ||||||||||| |||||||| ||||||||||||||||||| |||||  | |||||||||||    
T  22221066 tttatgacaaaattgtgtgagttgatttttaaaatgaacgtggatttgtcgaaatatatat 22221126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 22229469 - 22229521
Alignment:
Q  158 caaagttgtgtgaattgatttttaaaatgaacgaggattcatagaaatatata 210  Q
    ||||||||||| |||| |||||||||||||||| ||||| |||||||||||||    
T  22229469 caaagttgtgttaattaatttttaaaatgaacgtggatttatagaaatatata 22229521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University