View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7737_low_82 (Length: 217)
Name: NF7737_low_82
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_82 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 39581309 - 39581519
Alignment:
| Q |
8 |
ttcgtgttccctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccaccatgctggaaaatta |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39581309 |
ttcgtattccctacaaaatccaccaagaaaagtcatgtttggatgagcttgctccggcgataaccgcactggaaaacatcaccaccatgctggaaaatta |
39581408 |
T |
|
| Q |
108 |
tgtttaatgtttgcttaccgcaaccacaacggatgtttgagcataaaacagaaaccatgcttctgtttttatttaatttgtcaaac-aatatgctaaacg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39581409 |
tgtttaatgtttgcttaccgcaaccacaacggatgtttgagcataaatcagaaaccatgcttatgtttttatttaatttgtcaaacaaatatgctaaacg |
39581508 |
T |
|
| Q |
207 |
cgtttcagatc |
217 |
Q |
| |
|
||||||||||| |
|
|
| T |
39581509 |
cgtttcagatc |
39581519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 45021157 - 45021075
Alignment:
| Q |
8 |
ttcgtgttccctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccacc |
93 |
Q |
| |
|
||||| |||||||||||| |||| || ||||||||||||||||| || ||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
45021157 |
ttcgtattccctacaaaacccacaaa---aaatcatgtttggatgacatttctccgacgaccaccgcaccggaaaacatccccacc |
45021075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 31183450 - 31183240
Alignment:
| Q |
8 |
ttcgtgttccctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccaccatgctggaaaatta |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31183450 |
ttcgtattccctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcacaggaaaacatcaccaccatgctggaaaattc |
31183351 |
T |
|
| Q |
108 |
tgtttaatgtttgcttaccgcaaccacaacggatgtttgagcataaaacagaaaccatgcttctgtttttatttaatttgtcaaac-aatatgctaaacg |
206 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
31183350 |
tgtttaacgtttgcttaccgcaaccacaacgggtgtttgagcagaaatcagaaaccatgcttctgtttttatttaatttgtccaacaaatatgctaaacg |
31183251 |
T |
|
| Q |
207 |
cgtttcagatc |
217 |
Q |
| |
|
|||||||||| |
|
|
| T |
31183250 |
tgtttcagatc |
31183240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 56113264 - 56113182
Alignment:
| Q |
8 |
ttcgtgttccctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccacc |
93 |
Q |
| |
|
||||| |||||||||||| |||| || ||||||||||||||||| || ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
56113264 |
ttcgtattccctacaaaacccacaaa---aaatcatgtttggatgacatttctccgacgaccaccgcaccggaaaacatcaccacc |
56113182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 7313586 - 7313759
Alignment:
| Q |
45 |
tttggatgagcttgctccggcgataaccgcaccggaaaacatcaccaccatgctggaaaattatgtttaatgtttgcttaccgcaaccacaacggatgtt |
144 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
7313586 |
tttggatgagcttgctccggtgataaccacaccggaaaacatcaccaccatgctggaaaattctgtttaacgtttgcttaccgcagccacaacgggtgtt |
7313685 |
T |
|
| Q |
145 |
tgagcataaaacagaaaccatgcttctgtttttatttaatttgtcaaa-caatatgctaaacgcgtttcagatc |
217 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7313686 |
tgagcagaaatcaaaaaccatgcttctgtttttatttaatttgtcaaaccaatatgctaaacgcgtttcagatc |
7313759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 43460281 - 43460216
Alignment:
| Q |
18 |
ctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaa |
83 |
Q |
| |
|
|||||||| |||| ||||||||||||| | |||||| |||||||||||| ||||||| |||||| |
|
|
| T |
43460281 |
ctacaaaacccacaaagaaaaatcatgatcggatgaatttgctccggcgaccaccgcactggaaaa |
43460216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 41 - 217
Target Start/End: Complemental strand, 34387594 - 34387417
Alignment:
| Q |
41 |
catgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccaccatgctggaaaattatgtttaatgtttgcttaccgcaaccacaacgga |
140 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | || |||| | |
|
|
| T |
34387594 |
catgtttggatgagcttgctccggtgataaccacaccggaaaacatcaccaccatgctggaaaattttgtttaacgtttgcttaccgtagccccaacagg |
34387495 |
T |
|
| Q |
141 |
tgtttgagcataaaacagaaaccatgcttctgtttttatttaatttgtcaaa-caatatgctaaacgcgtttcagatc |
217 |
Q |
| |
|
| |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
34387494 |
tatttgagcataaatcagaaaccatgcttctatttttatttaatttgtcaaaccaatatgctaaacgtgtttcagatc |
34387417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 27848871 - 27848953
Alignment:
| Q |
8 |
ttcgtgttccctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccacc |
93 |
Q |
| |
|
||||| |||||||||||| |||| || ||||||||||||||||| || ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
27848871 |
ttcgtattccctacaaaacccacaaa---aaatcatgtttggatgacatttctccgacgaccaccgcaccggaaaacatcaccacc |
27848953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 33075736 - 33075818
Alignment:
| Q |
8 |
ttcgtgttccctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccacc |
93 |
Q |
| |
|
||||| |||||||||||| |||| || ||||||||||||||||| || ||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
33075736 |
ttcgtattccctacaaaacccacaaa---aaatcatgtttggatgacatttctccgacgaccaccgcaccggtaaacatcaccacc |
33075818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 3148443 - 3148527
Alignment:
| Q |
8 |
ttcgtgttccctacaaaatccaccaagaaaa-atcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcacca |
91 |
Q |
| |
|
||||| |||||||||||| |||| || |||| |||||||| |||||| || ||||| ||| ||||||||||||||||||||| |
|
|
| T |
3148443 |
ttcgtattccctacaaaacccacaaaaaaaaaatcatgttaggatgacatttctccgacgaccgccgcaccggaaaacatcacca |
3148527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 41 - 217
Target Start/End: Original strand, 24038884 - 24039061
Alignment:
| Q |
41 |
catgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccaccatgctggaaaattatgtttaatgtttgcttaccgcaaccacaacgga |
140 |
Q |
| |
|
|||||||||||||||||||||| | ||||| | |||||||||||||||||| |||||||||||||| | ||||| |||||||||||||||||||||| | |
|
|
| T |
24038884 |
catgtttggatgagcttgctccagtgataagcacaccggaaaacatcaccaacatgctggaaaattctatttaacgtttgcttaccgcaaccacaacagg |
24038983 |
T |
|
| Q |
141 |
tgtttgagcataaaacagaaaccatgcttctgtttttatttaatttgtcaaa-caatatgctaaacgcgtttcagatc |
217 |
Q |
| |
|
|||||||| | ||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
24038984 |
tgtttgagtagaaattagaaaccatgcttctggttttatttaatttgtcaaaccaatatgctaaacgggtttcagatc |
24039061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 41 - 217
Target Start/End: Complemental strand, 52143869 - 52143697
Alignment:
| Q |
41 |
catgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccaccatgctggaaaattatgtttaatgtttgcttaccgcaaccacaacgga |
140 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||||| || |||| | |||||||| ||||||||| |
|
|
| T |
52143869 |
catgtttgaatgagcttgctccggtgataaccacaccggaaaacatcgccaccatgctagaaaattctgattaacg-----ttaccgcagccacaacggg |
52143775 |
T |
|
| Q |
141 |
tgtttgagcataaaacagaaaccatgcttctgtttttatttaatttgtcaaa-caatatgctaaacgcgtttcagatc |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52143774 |
tgtttgagcataaatcagaaaccatgcttctgtttttatttaatttgtcaaaccaatatgctaaacgcgtttcagatc |
52143697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 29182808 - 29182973
Alignment:
| Q |
7 |
tttcgtgttccctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccaccatgctggaaaatt |
106 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||| |||||||| || ||||| |||||||| |||||||||| || ||||| ||||| || |
|
|
| T |
29182808 |
tttcgtattccctacaaaatccatcaagaaaaatcatgtttcaatgagctttttctggcgaccaccgcacctgaaaacatcagcatcatgccggaaattt |
29182907 |
T |
|
| Q |
107 |
atgtttaatgtttgcttaccgcaaccacaacggatgtttgagcataaaacagaaaccatgcttctgtttt |
176 |
Q |
| |
|
||||||| ||| | | ||| ||| |||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
29182908 |
ttgtttaacgttag----cagcagccataacgcgtgtttgagcataaatcagaaactatgcttctgtttt |
29182973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 80216 - 80273
Alignment:
| Q |
35 |
aaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccac |
92 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
80216 |
aaaaatcatgtttggatgaccttgctctggcgaccaccgcaccgggaaacatcaccac |
80273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 37087641 - 37087724
Alignment:
| Q |
8 |
ttcgtgttccctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccacca |
94 |
Q |
| |
|
||||| |||||||||||| |||| || ||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
37087641 |
ttcgtattccctacaaaacccacaaa---aaatcatgtttggatgacatttctccgacgaccaccgcaccggaaaacatcaccacca |
37087724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 535025 - 535101
Alignment:
| Q |
16 |
ccctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccacc |
93 |
Q |
| |
|
|||||||||| |||| || |||| ||||| |||||||| ||||||||| || ||||||||||||| |||||||||| |
|
|
| T |
535025 |
ccctacaaaaaccac-aacaaaattcatgattggatgaccttgctccgatgaccaccgcaccggaaagcatcaccacc |
535101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 3488899 - 3488812
Alignment:
| Q |
31 |
caagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccaccatgctggaaaattatgtttaatgtt |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||| | ||||||||||||| || ||||| || ||| ||||||| |
|
|
| T |
3488899 |
caagaaaaatcatgtttggatgaccttgctccggcgaccaccgcaacatgaaacatcaccaccgtgtcggaaatttctgtgtaatgtt |
3488812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 4533666 - 4533748
Alignment:
| Q |
8 |
ttcgtgttccctacaaaatccaccaagaaaaatcatgtttggatgagcttgctccggcgataaccgcaccggaaaacatcaccacc |
93 |
Q |
| |
|
||||| |||||||||||| |||| || ||||||||||||||||| || ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
4533666 |
ttcgtattccctacaaaacccacaaa---aaatcatgtttggatgacatttctccgacgaccaccgcaccggaaaacatcaccacc |
4533748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University