View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7737_low_9 (Length: 539)
Name: NF7737_low_9
Description: NF7737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7737_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 26 - 519
Target Start/End: Complemental strand, 29636016 - 29635511
Alignment:
| Q |
26 |
aacaaattgattaataaactcttcatgaaatagatgaattggagatagatatttgtactcagtgtgcctaggtgtgtcaacagaaaatacgaacaaaata |
125 |
Q |
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| T |
29636016 |
aacaaattgattaataaactcttcatgaaataaatgaattggagatagatatttgtactcagtgtgcctaggtgtgtcaacagaaaatacgaacaaaata |
29635917 |
T |
|
| Q |
126 |
aatgatt------------gagtgaactcacccactctttaggattcacttcacccttttgtacctttatgtgtagaatttgaattattgcccacaaagt |
213 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29635916 |
aatgattatcaaaatgattgagtgaactcacccactctttaggattcacttcacccttttttacctttatgtgtagaatttgaattattgcccacaaagt |
29635817 |
T |
|
| Q |
214 |
gtttgtaaaattgactgggagagaaataggcaaaagggcttttgagaataaggaaaataagagagttacgtggaagataggttggtgtattgtataatgg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
29635816 |
gtttgtaaaattgactgggagagaaataggcaaaagggcttttgagaataaggaaaataagagagttacgtggaagatagattggagtattgtataatgg |
29635717 |
T |
|
| Q |
314 |
taattataggaatgacaaatagtagcattaacttggtgtttcatcatgggttaacattgcctcgtgaacatgtaacttcattagtgagaccttgtgcaag |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29635716 |
taattataggaatgacaaatagtagcattaacttggtgtttcatcatgggttaacattgcctcatgaacatgtaacttcattagtgagaccttgtgcaag |
29635617 |
T |
|
| Q |
414 |
atttaatttgaattatgcaacaacttggggtgttaccagttctagtaaagctcaaagattgaaagggtataagcagcttgtaagaaacagttccatcagt |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29635616 |
atttaatttgaattatgcaacaacttggggtgttaccagttctagtaaagctcaaagattgaaagagtataagcagcttgtaagaaacagttccatcagt |
29635517 |
T |
|
| Q |
514 |
tgtgag |
519 |
Q |
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|||||| |
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| T |
29635516 |
tgtgag |
29635511 |
T |
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